PLATE-Seq for genome-wide regulatory network analysis of high-throughput screens

by Erin C. Bush, Forest Ray, Mariano J. Alvarez, Ronald Realubit, Hai Li, Charles Karan, Andrea Califano, Peter A. Sims
Published 2017-07-01

Graph complexity analysis identifies an ETV5 tumor-specific network in human and murine low-grade glioma.

by Yuan Pan, Christina Duron, Erin C Bush, Yu Ma, Peter A Sims, David H Gutmann, Ami Radunskaya, Johanna Hardin
Published 2018-01-01

De novo gene signature identification from single‐cell RNA‐seq with hierarchical Poisson factorization

by Hanna Mendes Levitin, Jinzhou Yuan, Yim Ling Cheng, Francisco JR Ruiz, Erin C Bush, Jeffrey N Bruce, Peter Canoll, Antonio Iavarone, Anna Lasorella, David M Blei, Peter A Sims
Published 2019-02-01

Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease

by Peter A. Szabo, Hanna Mendes Levitin, Michelle Miron, Mark E. Snyder, Takashi Senda, Jinzhou Yuan, Yim Ling Cheng, Erin C. Bush, Pranay Dogra, Puspa Thapa, Donna L. Farber, Peter A. Sims
Published 2019-10-01

Single-cell transcriptome analysis of lineage diversity in high-grade glioma

by Jinzhou Yuan, Hanna Mendes Levitin, Veronique Frattini, Erin C. Bush, Deborah M. Boyett, Jorge Samanamud, Michele Ceccarelli, Athanassios Dovas, George Zanazzi, Peter Canoll, Jeffrey N. Bruce, Anna Lasorella, Antonio Iavarone, Peter A. Sims
Published 2018-07-01