13C-metabolic flux analysis of ethanol-assimilating Saccharomyces cerevisiae for S-adenosyl-l-methionine production

by Kenshi Hayakawa, Fumio Matsuda, Hiroshi Shimizu
Published 2018-05-01

Assessment of Protein Content and Phosphorylation Level in <i>Synechocystis</i> sp. PCC 6803 under Various Growth Conditions Using Quantitative Phosphoproteomic Analysis

by Masakazu Toyoshima, Yuma Tokumaru, Fumio Matsuda, Hiroshi Shimizu
Published 2020-08-01

Novel allosteric inhibition of phosphoribulokinase identified by ensemble kinetic modeling of Synechocystis sp. PCC 6803 metabolism

by Hiroki Nishiguchi, James Liao, Hiroshi Shimizu, Fumio Matsuda
Published 2020-12-01

OpenMebius: An Open Source Software for Isotopically Nonstationary 13C-Based Metabolic Flux Analysis

by Shuichi Kajihata, Chikara Furusawa, Fumio Matsuda, Hiroshi Shimizu
Published 2014-01-01

Elevated Sporulation Efficiency in Fission Yeast <i>Schizosaccharomyces Japonicus</i> Strains Isolated from <i>Drosophila</i>

by Taisuke Seike, Natsue Sakata, Fumio Matsuda, Chikara Furusawa
Published 2021-04-01

Analyses of Lipid A Diversity in Gram-Negative Intestinal Bacteria Using Liquid Chromatography–Quadrupole Time-of-Flight Mass Spectrometry

by Nobuyuki Okahashi, Masahiro Ueda, Fumio Matsuda, Makoto Arita
Published 2021-03-01

Drought Stress Responses in Context-Specific Genome-Scale Metabolic Models of <i>Arabidopsis thaliana</i>

by Ratklao Siriwach, Fumio Matsuda, Kentaro Yano, Masami Yokota Hirai
Published 2020-04-01

Targeted proteome analysis of single-gene deletion strains of Saccharomyces cerevisiae lacking enzymes in the central carbon metabolism.

by Fumio Matsuda, Syohei Kinoshita, Shunsuke Nishino, Atsumi Tomita, Hiroshi Shimizu
Published 2017-01-01

Metabolic engineering of Synechococcus elongatus PCC 7942 for improvement of 1,3-propanediol and glycerol production based on in silico simulation of metabolic flux distribution

by Yasutaka Hirokawa, Shingo Matsuo, Hiroyuki Hamada, Fumio Matsuda, Taizo Hanai
Published 2017-11-01

Investigation of useful carbon tracers for 13C-metabolic flux analysis of Escherichia coli by considering five experimentally determined flux distributions

by Kousuke Maeda, Nobuyuki Okahashi, Yoshihiro Toya, Fumio Matsuda, Hiroshi Shimizu
Published 2016-12-01

Random Transfer of <i>Ogataea polymorpha</i> Genes into <i>Saccharomyces cerevisiae</i> Reveals a Complex Background of Heat Tolerance

by Taisuke Seike, Yuki Narazaki, Yoshinobu Kaneko, Hiroshi Shimizu, Fumio Matsuda
Published 2021-04-01

Repression of mitochondrial metabolism for cytosolic pyruvate-derived chemical production in Saccharomyces cerevisiae

by Keisuke Morita, Fumio Matsuda, Koji Okamoto, Jun Ishii, Akihiko Kondo, Hiroshi Shimizu
Published 2019-10-01

Changes in Primary and Secondary Metabolite Levels in Response to Gene Targeting-Mediated Site-Directed Mutagenesis of the Anthranilate Synthase Gene in Rice

by Seiichi Toki, Kazuki Saito, Ryo Nakabayashi, Fumio Matsuda, Akira Oikawa, Hiroaki Saika
Published 2012-12-01

Comparative Targeted Proteomics of the Central Metabolism and Photosystems in SigE Mutant Strains of Synechocystis sp. PCC 6803

by Yuma Tokumaru, Kiyoka Uebayashi, Masakazu Toyoshima, Takashi Osanai, Fumio Matsuda, Hiroshi Shimizu
Published 2018-05-01

Mutations in hik26 and slr1916 lead to high-light stress tolerance in Synechocystis sp. PCC6803

by Katsunori Yoshikawa, Kenichi Ogawa, Yoshihiro Toya, Seiji Akimoto, Fumio Matsuda, Hiroshi Shimizu
Published 2021-03-01

mfapy: An open-source Python package for 13C-based metabolic flux analysis

by Fumio Matsuda, Kousuke Maeda, Takeo Taniguchi, Yuya Kondo, Futa Yatabe, Nobuyuki Okahashi, Hiroshi Shimizu
Published 2021-12-01

Evaluation of Brachypodium distachyon L-Tyrosine Decarboxylase Using L-Tyrosine Over-Producing Saccharomyces cerevisiae.

by Shuhei Noda, Tomokazu Shirai, Keiichi Mochida, Fumio Matsuda, Sachiko Oyama, Mami Okamoto, Akihiko Kondo
Published 2015-01-01

Assessment of metabolome annotation quality: a method for evaluating the false discovery rate of elemental composition searches.

by Fumio Matsuda, Yoko Shinbo, Akira Oikawa, Masami Yokota Hirai, Oliver Fiehn, Shigehiko Kanaya, Kazuki Saito
Published 2009-01-01

Synthetic production of prenylated naringenins in yeast using promiscuous microbial prenyltransferases

by Shota Isogai, Nobuyuki Okahashi, Ririka Asama, Tomomi Nakamura, Tomohisa Hasunuma, Fumio Matsuda, Jun Ishii, Akihiko Kondo
Published 2021-06-01

A pyruvate carbon flux tugging strategy for increasing 2,3-butanediol production and reducing ethanol subgeneration in the yeast Saccharomyces cerevisiae

by Jun Ishii, Keisuke Morita, Kengo Ida, Hiroko Kato, Shohei Kinoshita, Shoko Hataya, Hiroshi Shimizu, Akihiko Kondo, Fumio Matsuda
Published 2018-06-01