Considerations for clinical read alignment and mutational profiling using next-generation sequencing [v2; ref status: indexed, http://f1000r.es/NMpsFc]

by Gavin R Oliver
Published 2012-09-01

Considerations for clinical read alignment and mutational profiling using next-generation sequencing

by Gavin R Oliver
Published 2012-07-01

Assessing Human Genetic Variations in Glucose Transporter SLC2A10 and Their Role in Altering Structural and Functional Properties

by Michael T. Zimmermann, Michael T. Zimmermann, Raul Urrutia, Raul Urrutia, Margot A. Cousin, Gavin R. Oliver, Gavin R. Oliver, Eric W. Klee, Eric W. Klee
Published 2018-07-01

“The molecule’s the thing:” the promise of molecular modeling and dynamic simulations in aiding the prioritization and interpretation of genomic testing results [version 2; referee...

by Gavin R. Oliver, Michael T. Zimmerman, Eric W. Klee, Raul A. Urrutia
Published 2016-06-01

“The molecule’s the thing:” the promise of molecular modeling and dynamic simulations in aiding the prioritization and interpretation of genomic testing results [version 3; referee...

by Gavin R. Oliver, Michael T. Zimmermann, Eric W. Klee, Raul A. Urrutia
Published 2016-07-01

Interpretation challenges of novel dual‐class missense and splice‐impacting variant in POLR3A‐related late‐onset hereditary spastic ataxia

by Joel A. Morales‐Rosado, Erica L. Macke, Margot A. Cousin, Gavin R. Oliver, Radhika Dhamija, Eric W. Klee
Published 2020-09-01

Molecular modeling and molecular dynamic simulation of the effects of variants in the TGFBR2 kinase domain as a paradigm for interpretation of variants obtained by next generation...

by Michael T Zimmermann, Raul Urrutia, Gavin R Oliver, Patrick R Blackburn, Margot A Cousin, Nicole J Bozeck, Eric W Klee
Published 2017-01-01

PANDA: pathway and annotation explorer for visualizing and interpreting gene-centric data

by Steven N. Hart, Raymond M. Moore, Michael T. Zimmermann, Gavin R. Oliver, Jan B. Egan, Alan H. Bryce, Jean-Pierre A. Kocher
Published 2015-05-01

Long-range Transcriptome Sequencing Reveals Cancer Cell Growth Regulatory Chimeric mRNA

by Roberto Plebani, Gavin R Oliver, Marco Trerotola, Emanuela Guerra, Pamela Cantanelli, Luana Apicella, Andrew Emerson, Alessandro Albiero, Paul D Harkin, Richard D Kennedy, Saverio Alberti
Published 2012-11-01

A tailored approach to fusion transcript identification increases diagnosis of rare inherited disease.

by Gavin R Oliver, Xiaojia Tang, Laura E Schultz-Rogers, Noemi Vidal-Folch, W Garrett Jenkinson, Tanya L Schwab, Krutika Gaonkar, Margot A Cousin, Asha Nair, Shubham Basu, Pritha Chanana, Devin Oglesbee, Eric W Klee
Published 2019-01-01

Comprehensive genomic profiling of a rare thyroid follicular dendritic cell sarcoma

by Jaime I. Davila, Jason S. Starr, Steven Attia, Chen Wang, Ryan A. Knudson, Brian M. Necela, Vivekananda Sarangi, Zhifu Sun, Yingxue Ren, John D. Casler, David M. Menke, Gavin R. Oliver, Richard W. Joseph, John A. Copland, Alexander S. Parker, Jean-Pierre A. Kocher, E. Aubrey Thompson, Robert C. Smallridge, Yan W. Asmann
Published 2017-09-01

LPCAT1-TERT fusions are uniquely recurrent in epithelioid trophoblastic tumors and positively regulate cell growth.

by Gavin R Oliver, Sofia Marcano-Bonilla, Jonathan Quist, Ezequiel J Tolosa, Eriko Iguchi, Amy A Swanson, Nicole L Hoppman, Tanya Schwab, Ashley Sigafoos, Naresh Prodduturi, Jesse S Voss, Shannon M Knight, Jin Zhang, Numrah Fadra, Raul Urrutia, Michael Zimmerman, Jan B Egan, Anthony G Bilyeu, Jin Jen, Ema Veras, Rema'a Al-Safi, Matthew Block, Sarah Kerr, Martin E Fernandez-Zapico, John K Schoolmeester, Eric W Klee
Published 2021-01-01

Integrated genomic characterization reveals novel, therapeutically relevant drug targets in FGFR and EGFR pathways in sporadic intrahepatic cholangiocarcinoma.

by Mitesh J Borad, Mia D Champion, Jan B Egan, Winnie S Liang, Rafael Fonseca, Alan H Bryce, Ann E McCullough, Michael T Barrett, Katherine Hunt, Maitray D Patel, Scott W Young, Joseph M Collins, Alvin C Silva, Rachel M Condjella, Matthew Block, Robert R McWilliams, Konstantinos N Lazaridis, Eric W Klee, Keith C Bible, Pamela Harris, Gavin R Oliver, Jaysheel D Bhavsar, Asha A Nair, Sumit Middha, Yan Asmann, Jean-Pierre Kocher, Kimberly Schahl, Benjamin R Kipp, Emily G Barr Fritcher, Angela Baker, Jessica Aldrich, Ahmet Kurdoglu, Tyler Izatt, Alexis Christoforides, Irene Cherni, Sara Nasser, Rebecca Reiman, Lori Phillips, Jackie McDonald, Jonathan Adkins, Stephen D Mastrian, Pamela Placek, Aprill T Watanabe, Janine Lobello, Haiyong Han, Daniel Von Hoff, David W Craig, A Keith Stewart, John D Carpten
Published 2014-02-01