A Peninsular Structure Coordinates Asynchronous Differentiation with Morphogenesis to Generate Pancreatic Islets

by Gifford, David K
Published 2021

Quantification of Uncertainty in Peptide-MHC Binding Prediction Improves High-Affinity Peptide Selection for Therapeutic Design

by Zeng, Haoyang, Gifford, David K
Published 2020

Modular combinatorial binding among human trans-acting factors reveals direct and indirect factor binding

by Guo, Yuchun, Gifford, David K
Published 2017

Differential chromatin profiles partially determine transcription factor binding

by Chen, Rujian, Gifford, David K
Published 2018

DeepLigand: accurate prediction of MHC class I ligands using peptide embedding

by Zeng, Haoyang, Gifford, David K
Published 2021

Predicting the impact of non-coding variants on DNA methylation

by Zeng, Haoyang, Gifford, David K
Published 2017

High-resolution genetic mapping with pooled sequencing

by Edwards, Matthew Douglas, Gifford, David K.
Published 2012

ReadDB Provides Efficient Storage for Mapped Short Reads

by Rolfe, Philip Alexander, Gifford, David K.
Published 2011

High-resolution genetic mapping with pooled sequencing

by Edwards, Matthew Douglas, Gifford, David K.
Published 2013

spatzie: an R package for identifying significant transcription factor motif co-enrichment from enhancer-promoter interactions

by Hammelman, Jennifer, Krismer, Konstantin, Gifford, David K
Published 2022

IDR2D identifies reproducible genomic interactions

by Krismer, Konstantin, Guo, Yuchun, Gifford, David K
Published 2020

seqgra: principled selection of neural network architectures for genomics prediction tasks

by Krismer, Konstantin, Hammelman, Jennifer, Gifford, David K
Published 2022

Visualizing complex feature interactions and feature sharing in genomic deep neural networks

by Liu, Ge, Zeng, Haoyang, Gifford, David K
Published 2020

Universal Count Correction for High-Throughput Sequencing

by Hashimoto, Tatsunori Benjamin, Edwards, Matthew Douglas, Gifford, David K.
Published 2014

Identification of determinants of differential chromatin accessibility through a massively parallel genome-integrated reporter assay

by Hammelman, Jennifer, Krismer, Konstantin, Gifford, David K, Sherwood, Richard I.
Published 2021

Generative modeling of single-cell time series with PRESCIENT enables prediction of cell trajectories with interventions

by Yeo, Grace Hui Ting, Saksena, Sachit D, Gifford, David K
Published 2022

Convolutional neural network architectures for predicting DNA-protein binding

by Zeng, Haoyang, Edwards, Matthew D, Liu, Ge, Gifford, David K
Published 2017

Comprehensive Mapping of Key Regulatory Networks that Drive Oncogene Expression

by Lin, Lin, Holmes, Benjamin Ray, Shen, Max Walt, Gifford, David K
Published 2021

Control of Transcription by Cell Size

by Wu, Chia-Yung, Rolfe, Philip Alexander, Gifford, David K, Fink, Gerald R
Published 2011