Editorial

by Haruki Nakamura
Published 2020-01-01

Improve publishing procedures of Biophysics and Physicobiology

by Haruki Nakamura
Published 2021-10-01

Integration of Ligand-Based Drug Screening with Structure-Based Drug Screening by Combining Maximum Volume Overlapping Score with Ligand Docking

by Yoshifumi Fukunishi, Haruki Nakamura
Published 2012-12-01

Statistical Estimation of the Protein-Ligand Binding Free Energy Based On Direct Protein-Ligand Interaction Obtained by Molecular Dynamics Simulation

by Haruki Nakamura, Yoshifumi Fukunishi
Published 2012-09-01

A Similarity Search Using Molecular Topological Graphs

by Yoshifumi Fukunishi, Haruki Nakamura
Published 2009-01-01

Improved Estimation of Protein-Ligand Binding Free Energy by Using the Ligand-Entropy and Mobility of Water Molecules

by Haruki Nakamura, Yoshifumi Fukunishi
Published 2013-04-01

Composite structural motifs of binding sites for delineating biological functions of proteins.

by Akira R Kinjo, Haruki Nakamura
Published 2012-01-01

Nature of protein family signatures: insights from singular value analysis of position-specific scoring matrices.

by Akira R Kinjo, Haruki Nakamura
Published 2008-04-01

Editorial

by Munehito Arai, Tamiki Komatsuzaki, Haruki Nakamura
Published 2020-12-01

How A Novel Scientific Concept Was Coined the “Molten Globule State”

by Yutaka Kuroda, Shigeru Endo, Haruki Nakamura
Published 2020-02-01

Correction: Patil, A. et al. Hub Promiscuity in Protein-Protein Interaction Networks. Int. J. Mol. Sci. 2010, 11, 1930-1943

by Haruki Nakamura, Kengo Kinoshita, Ashwini Patil
Published 2010-07-01

Discrimination between biological interfaces and crystal-packing contacts

by Yuko Tsuchiya, Haruki Nakamura, Kengo Kinoshita
Published 2008-11-01

Hub Promiscuity in Protein-Protein Interaction Networks

by Haruki Nakamura, Kengo Kinoshita, Ashwini Patil
Published 2010-04-01

A novel approach of dynamic cross correlation analysis on molecular dynamics simulations and its application to Ets1 dimer-DNA complex.

by Kota Kasahara, Ikuo Fukuda, Haruki Nakamura
Published 2014-01-01

Molecular dynamics simulations of double-stranded DNA in an explicit solvent model with the zero-dipole summation method.

by Takamasa Arakawa, Narutoshi Kamiya, Haruki Nakamura, Ikuo Fukuda
Published 2013-01-01

Classification of heterodimer interfaces using docking models and construction of scoring functions for the complex structure prediction

by Yuko Tsuchiya, Eiji Kanamori, Haruki Nakamura, et al
Published 2009-09-01

Molecular mechanisms of cooperative binding of transcription factors Runx1-CBFβ-Ets1 on the TCRα gene enhancer.

by Kota Kasahara, Masaaki Shiina, Ikuo Fukuda, Kazuhiro Ogata, Haruki Nakamura
Published 2017-01-01

Theoretical Investigation on Nearsightedness of Finite Model and Molecular Systems Based on Linear Response Function Analysis

by Yuki Mitsuta, Shusuke Yamanaka, Kizashi Yamaguchi, Mitsutaka Okumura, Haruki Nakamura
Published 2014-08-01

Conformational Ensembles of an Intrinsically Disordered Protein pKID with and without a KIX Domain in Explicit Solvent Investigated by All-Atom Multicanonical Molecular Dynamics

by Haruki Nakamura, Mitsunori Takano, Jinzen Ikebe, Koji Umezawa, Junichi Higo
Published 2012-02-01

Specific non-local interactions are not necessary for recovering native protein dynamics.

by Bhaskar Dasgupta, Kota Kasahara, Narutoshi Kamiya, Haruki Nakamura, Akira R Kinjo
Published 2014-01-01