The rise and fall of machine learning methods in biomedical research [version 2; referees: 2 approved]

by Hashem Koohy
Published 2018-01-01

In silico identification of vaccine targets for 2019-nCoV [version 2; peer review: 3 approved]

by Chloe H. Lee, Hashem Koohy
Published 2020-04-01

In silico identification of vaccine targets for 2019-nCoV [version 1; peer review: 2 approved]

by Chloe Hyun-Jung Lee, Hashem Koohy
Published 2020-02-01

Chromatin accessibility data sets show bias due to sequence specificity of the DNase I enzyme.

by Hashem Koohy, Thomas A Down, Tim J Hubbard
Published 2013-01-01

Predicting Cross-Reactivity and Antigen Specificity of T Cell Receptors

by Chloe H. Lee, Chloe H. Lee, Mariolina Salio, Giorgio Napolitani, Graham Ogg, Alison Simmons, Alison Simmons, Hashem Koohy, Hashem Koohy
Published 2020-10-01

A comparison of peak callers used for DNase-Seq data.

by Hashem Koohy, Thomas A Down, Mikhail Spivakov, Tim Hubbard
Published 2014-01-01

Local Chromatin Features Including PU.1 and IKAROS Binding and H3K4 Methylation Shape the Repertoire of Immunoglobulin Kappa Genes Chosen for V(D)J Recombination

by Louise S. Matheson, Daniel J. Bolland, Peter Chovanec, Felix Krueger, Simon Andrews, Hashem Koohy, Anne E. Corcoran
Published 2017-11-01

Potential CD8+ T Cell Cross-Reactivity Against SARS-CoV-2 Conferred by Other Coronavirus Strains

by Chloe H. Lee, Chloe H. Lee, Chloe H. Lee, Mariana Pereira Pinho, Mariana Pereira Pinho, Paul R. Buckley, Paul R. Buckley, Paul R. Buckley, Isaac B. Woodhouse, Isaac B. Woodhouse, Isaac B. Woodhouse, Graham Ogg, Graham Ogg, Graham Ogg, Alison Simmons, Alison Simmons, Alison Simmons, Giorgio Napolitani, Giorgio Napolitani, Hashem Koohy, Hashem Koohy, Hashem Koohy
Published 2020-11-01

Two Mutually Exclusive Local Chromatin States Drive Efficient V(D)J Recombination

by Daniel J. Bolland, Hashem Koohy, Andrew L. Wood, Louise S. Matheson, Felix Krueger, Michael J.T. Stubbington, Amanda Baizan-Edge, Peter Chovanec, Bryony A. Stubbs, Kristina Tabbada, Simon R. Andrews, Mikhail Spivakov, Anne E. Corcoran
Published 2016-06-01

Genome organization and chromatin analysis identify transcriptional downregulation of insulin-like growth factor signaling as a hallmark of aging in developing B cells

by Hashem Koohy, Daniel J. Bolland, Louise S. Matheson, Stefan Schoenfelder, Claudia Stellato, Andrew Dimond, Csilla Várnai, Peter Chovanec, Tamara Chessa, Jeremy Denizot, Raquel Manzano Garcia, Steven W. Wingett, Paula Freire-Pritchett, Takashi Nagano, Phillip Hawkins, Len Stephens, Sarah Elderkin, Mikhail Spivakov, Peter Fraser, Anne E. Corcoran, Patrick D. Varga-Weisz
Published 2018-09-01