Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples

by Jake Lin, Lenka Kramna, Reija Autio, Heikki Hyöty, Matti Nykter, Ondrej Cinek
Published 2017-05-01

Urbanization Reduces Transfer of Diverse Environmental Microbiota Indoors

by Anirudra Parajuli, Mira Grönroos, Nathan Siter, Riikka Puhakka, Heli K. Vari, Marja I. Roslund, Ari Jumpponen, Noora Nurminen, Olli H. Laitinen, Heikki Hyöty, Heikki Hyöty, Juho Rajaniemi, Aki Sinkkonen
Published 2018-02-01

Genetic Adaptation of Coxsackievirus B1 during Persistent Infection in Pancreatic Cells

by Anni Honkimaa, Bryn Kimura, Amir-Babak Sioofy-Khojine, Jake Lin, Jutta Laiho, Sami Oikarinen, Heikki Hyöty
Published 2020-11-01

Correction: Saarinen, N.V.V., et al. Multiplexed High-Throughput Serological Assay for Human Enteroviruses. <em>Microorganismis</em> 2020, <em>8</em>, 963

by Niila V. V. Saarinen, Jussi Lehtonen, Riitta Veijola, Johanna Lempainen, Mikael Knip, Heikki Hyöty, Olli H. Laitinen, Vesa P. Hytönen
Published 2020-09-01

Multiplexed High-Throughput Serological Assay for Human Enteroviruses

by Niila V. V. Saarinen, Jussi Lehtonen, Riitta Veijola, Johanna Lempainen, Mikael Knip, Heikki Hyöty, Olli H. Laitinen, Vesa P. Hytönen
Published 2020-06-01

Molecular epidemiology of enteroviruses in young children at increased risk of type 1 diabetes.

by Amir-Babak Sioofy-Khojine, Sami Oikarinen, Hanna Honkanen, Heini Huhtala, Jussi P Lehtonen, Thomas Briese, Heikki Hyöty, TEDDY Study Group
Published 2018-01-01

Half-lives of PAHs and temporal microbiota changes in commonly used urban landscaping materials

by Marja I. Roslund, Mira Grönroos, Anna-Lea Rantalainen, Ari Jumpponen, Martin Romantschuk, Anirudra Parajuli, Heikki Hyöty, Olli Laitinen, Aki Sinkkonen
Published 2018-03-01

Enterovirus Infections Are Associated With the Development of Celiac Disease in a Birth Cohort Study

by Maarit Oikarinen, Leena Puustinen, Jussi Lehtonen, Leena Hakola, Leena Hakola, Satu Simell, Jorma Toppari, Jorma Toppari, Jorma Ilonen, Riitta Veijola, Riitta Veijola, Suvi M. Virtanen, Suvi M. Virtanen, Suvi M. Virtanen, Suvi M. Virtanen, Mikael Knip, Mikael Knip, Mikael Knip, Heikki Hyöty, Heikki Hyöty
Published 2021-02-01

Detection of Viral −RNA and +RNA Strands in Enterovirus-Infected Cells and Tissues

by Sami Salmikangas, Jutta E. Laiho, Kerttu Kalander, Mira Laajala, Anni Honkimaa, Iryna Shanina, Sami Oikarinen, Marc S. Horwitz, Heikki Hyöty, Varpu Marjomäki
Published 2020-12-01

Next-Generation Sequencing Combined with Specific PCR Assays To Determine the Bacterial 16S rRNA Gene Profiles of Middle Ear Fluid Collected from Children with Acute Otitis Media

by Saara Sillanpaa, Lenka Kramna, Sami Oikarinen, Markku Sipila, Markus Rautiainen, Janne Aittoniemi, Jussi Laranne, Heikki Hyoty, Ondrej Cinek, Paul D. Fey
Published 2017-03-01

Differential Detection of Encapsidated versus Unencapsidated Enterovirus RNA in Samples Containing Pancreatic Enzymes—Relevance for Diabetes Studies

by Maarit Oikarinen, Lori Bertolet, Antonio Toniolo, Sami Oikarinen, Jutta E. Laiho, Alberto Pugliese, Richard E. Lloyd, Heikki Hyöty, the nPOD-V Study Group
Published 2020-07-01

The relationship between breastfeeding and reported respiratory and gastrointestinal infection rates in young children

by Nicole M. Frank, Kristian F. Lynch, Ulla Uusitalo, Jimin Yang, Maria Lönnrot, Suvi M. Virtanen, Heikki Hyöty, Jill M. Norris, for the TEDDY Study Group
Published 2019-09-01

Endocrine disruption and commensal bacteria alteration associated with gaseous and soil PAH contamination among daycare children

by Marja I. Roslund, Sonja Rantala, Sami Oikarinen, Riikka Puhakka, Nan Hui, Anirudra Parajuli, Olli H. Laitinen, Heikki Hyöty, Anna-Lea Rantalainen, Aki Sinkkonen, Mira Grönroos, Nan Hui, Raul Kalvo, Noora Nurminen, Sami Oikarinen, Anirudra Parajuli, Riikka Puhakka, Sonja Rantala, Marja I. Roslund, Laura Soininen, Guoyong Yan, Olli H. Laitinen, Juho Rajaniemi, Heikki Hyöty, Aki Sinkkonen
Published 2019-09-01

Antibody Responses against Enterovirus Proteases are Potential Markers for an Acute Infection

by Niila V. V. Saarinen, Virginia M. Stone, Minna M. Hankaniemi, Magdalena A. Mazur, Tytti Vuorinen, Malin Flodström-Tullberg, Heikki Hyöty, Vesa P. Hytönen, Olli H. Laitinen
Published 2020-01-01

Cord-Blood Lipidome in Progression to Islet Autoimmunity and Type 1 Diabetes

by Santosh Lamichhane, Linda Ahonen, Thomas Sparholt Dyrlund, Alex M. Dickens, Heli Siljander, Heikki Hyöty, Jorma Ilonen, Jorma Toppari, Riitta Veijola, Tuulia Hyötyläinen, Mikael Knip, Matej Oresic
Published 2019-01-01

The abundance of health-associated bacteria is altered in PAH polluted soils-Implications for health in urban areas?

by Anirudra Parajuli, Mira Grönroos, Sari Kauppi, Tomasz Płociniczak, Marja I Roslund, Polina Galitskaya, Olli H Laitinen, Heikki Hyöty, Ari Jumpponen, Rauni Strömmer, Martin Romantschuk, Nan Hui, Aki Sinkkonen
Published 2017-01-01

Higher parental occupational social contact is associated with a reduced risk of incident pediatric type 1 diabetes: Mediation through molecular enteroviral indices.

by Anne-Louise Ponsonby, Angela Pezic, Fergus J Cameron, Christine Rodda, Andrew S Kemp, John B Carlin, Heikki Hyoty, Amirbabak Sioofy-Khojine, Terence Dwyer, Justine A Ellis, Maria E Craig
Published 2018-01-01

Diagnostic Methods for and Clinical Pictures of Polyomavirus Primary Infections in Children, Finland

by Tingting Chen, Laura Tanner, Ville Simell, Lea Hedman, Marjaana Mäkinen, Mohammadreza Sadeghi, Riitta Veijola, Heikki Hyöty, Jorma Ilonen, Mikael Knip, Jorma Toppari, Olli Simell, Maria Söderlund-Venermo, Klaus Hedman
Published 2014-04-01

Coxsackievirus B Persistence Modifies the Proteome and the Secretome of Pancreatic Ductal Cells

by Niina Lietzén, Karoliina Hirvonen, Anni Honkimaa, Tanja Buchacher, Jutta E. Laiho, Sami Oikarinen, Magdalena A. Mazur, Malin Flodström-Tullberg, Eric Dufour, Amir-Babak Sioofy-Khojine, Heikki Hyöty, Riitta Lahesmaa
Published 2019-09-01

Long-term biodiversity intervention shapes health-associated commensal microbiota among urban day-care children

by Marja I. Roslund, Riikka Puhakka, Noora Nurminen, Sami Oikarinen, Nathan Siter, Mira Grönroos, Ondřej Cinek, Lenka Kramná, Ari Jumpponen, Olli H. Laitinen, Juho Rajaniemi, Heikki Hyöty, Aki Sinkkonen, Damiano Cerrone, Mira Grönroos, Nan Hui, Iida Mäkelä, Noora Nurminen, Sami Oikarinen, Anirudra Parajuli, Riikka Puhakka, Marja I. Roslund, Mika Saarenpää, Laura Soininen, Yan Sun, Heli K. Vari, Olli H. Laitinen, Juho Rajaniemi, Heikki Hyöty, Aki Sinkkonen
Published 2021-12-01