From structure prediction to genomic screens for novel non-coding RNAs.

by Jan Gorodkin, Ivo L Hofacker
Published 2011-08-01

Functional RNA Structures in the 3′UTR of Tick-Borne, Insect-Specific and No-Known-Vector Flaviviruses

by Roman Ochsenreiter, Ivo L. Hofacker, Michael T. Wolfinger
Published 2019-03-01

MSF: Modulated Sub-graph Finder [version 2; peer review: 1 approved, 2 approved with reservations]

by Mariam R. Farman, Ivo L. Hofacker, Fabian Amman
Published 2019-03-01

MSF: Modulated Sub-graph Finder [version 3; peer review: 1 approved, 2 approved with reservations]

by Mariam R. Farman, Ivo L. Hofacker, Fabian Amman
Published 2019-04-01

Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering.

by Sebastian Will, Kristin Reiche, Ivo L Hofacker, Peter F Stadler, Rolf Backofen
Published 2007-04-01

3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements. [version 2; peer review: 2 approved]

by Bernhard C. Thiel, Irene K. Beckmann, Peter Kerpedjiev, Ivo L. Hofacker
Published 2019-04-01

RNA Structure Elements Conserved between Mouse and 59 Other Vertebrates

by Bernhard C. Thiel, Roman Ochsenreiter, Veerendra P. Gadekar, Andrea Tanzer, Ivo L. Hofacker
Published 2018-08-01

Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA.

by Christopher A Lavender, Ronny Lorenz, Ge Zhang, Rita Tamayo, Ivo L Hofacker, Kevin M Weeks
Published 2015-05-01

Updated Phylogeny of Chikungunya Virus Suggests Lineage-Specific RNA Architecture

by Adriano de Bernardi Schneider, Roman Ochsenreiter, Reilly Hostager, Ivo L. Hofacker, Daniel Janies, Michael T. Wolfinger
Published 2019-08-01

RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure.

by Corinna Theis, Craig L Zirbel, Christian Höner Zu Siederdissen, Christian Anthon, Ivo L Hofacker, Henrik Nielsen, Jan Gorodkin
Published 2015-01-01

Zinc-finger protein CNBP alters the 3-D structure of lncRNA Braveheart in solution

by Doo Nam Kim, Bernhard C. Thiel, Tyler Mrozowich, Scott P. Hennelly, Ivo L. Hofacker, Trushar R. Patel, Karissa Y. Sanbonmatsu
Published 2020-01-01