Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing

by Karsten Bach, Sara Pensa, Marta Grzelak, James Hadfield, David J. Adams, John C. Marioni, Walid T. Khaled
Published 2017-12-01

Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure

by Maria C. Fookes, James Hadfield, Simon Harris, Surendra Parmar, Magnus Unemo, Jørgen S. Jensen, Nicholas R. Thomson
Published 2017-12-01

Real-Time Genomics for Tracking Severe Acute Respiratory Syndrome Coronavirus 2 Border Incursions after Virus Elimination, New Zealand

by Jordan Douglas, Jemma L. Geoghegan, James Hadfield, Remco Bouckaert, Matthew Storey, Xiaoyun Ren, Joep de Ligt, Nigel French, David Welch
Published 2021-09-01

The Nature and Extent of Plasmid Variation in <i>Chlamydia trachomatis</i>

by Charlotte A. Jones, James Hadfield, Nicholas R. Thomson, David W. Cleary, Peter Marsh, Ian N. Clarke, Colette E. O’Neill
Published 2020-03-01

Twenty years of West Nile virus spread and evolution in the Americas visualized by Nextstrain.

by James Hadfield, Anderson F Brito, Daniele M Swetnam, Chantal B F Vogels, Ryan E Tokarz, Kristian G Andersen, Ryan C Smith, Trevor Bedford, Nathan D Grubaugh
Published 2019-10-01

Independence of HIF1a and androgen signaling pathways in prostate cancer

by Maxine G. B. Tran, Becky A. S. Bibby, Lingjian Yang, Franklin Lo, Anne Y. Warren, Deepa Shukla, Michelle Osborne, James Hadfield, Thomas Carroll, Rory Stark, Helen Scott, Antonio Ramos-Montoya, Charlie Massie, Patrick Maxwell, Catharine M. L. West, Ian G. Mills, David E. Neal
Published 2020-05-01

Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages

by Patiyan Andersson, Simon R. Harris, Helena M. B. Seth Smith, James Hadfield, Colette O’Neill, Lesley T. Cutcliffe, Fiona P. Douglas, L. Valerie Asche, John D. Mathews, Susan I. Hutton, Derek S. Sarovich, Steven Y. C. Tong, Ian N. Clarke, Nicholas R. Thomson, Philip M. Giffard
Published 2016-02-01

Fragmentation patterns and personalized sequencing of cell‐free DNA in urine and plasma of glioma patients

by Florent Mouliere, Christopher G Smith, Katrin Heider, Jing Su, Ymke van derPol, Mareike Thompson, James Morris, Jonathan C M Wan, Dineika Chandrananda, James Hadfield, Marta Grzelak, Irena Hudecova, Dominique‐Laurent Couturier, Wendy Cooper, Hui Zhao, Davina Gale, Matthew Eldridge, Colin Watts, Kevin Brindle, Nitzan Rosenfeld, Richard Mair
Published 2021-08-01

The Seattle Flu Study: a multiarm community-based prospective study protocol for assessing influenza prevalence, transmission and genomic epidemiology

by Kira Newman, Helen Y Chu, Michael Boeckh, Janet A Englund, Michael Famulare, Lea M Starita, Elisabeth Brandstetter, Chris D Frazer, Peter D Han, Reena K Gulati, James Hadfield, Anahita Kiavand, Louise E Kimball, Kirsten Lacombe, Thomas R Sibley, Jennifer K Logue, Victoria Rachel Lyon, Caitlin R Wolf, Jay Shendure, Trevor Bedford
Published 2020-10-01

Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand

by Jemma L. Geoghegan, Xiaoyun Ren, Matthew Storey, James Hadfield, Lauren Jelley, Sarah Jefferies, Jill Sherwood, Shevaun Paine, Sue Huang, Jordan Douglas, Fábio K. Mendes, Andrew Sporle, Michael G. Baker, David R. Murdoch, Nigel French, Colin R. Simpson, David Welch, Alexei J. Drummond, Edward C. Holmes, Sebastián Duchêne, Joep de Ligt
Published 2020-12-01

Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand

by Jemma L. Geoghegan, Jordan Douglas, Xiaoyun Ren, Matthew Storey, James Hadfield, Olin K. Silander, Nikki E. Freed, Lauren Jelley, Sarah Jefferies, Jillian Sherwood, Shevaun Paine, Sue Huang, Andrew Sporle, Michael G. Baker, David R. Murdoch, Alexei J. Drummond, David Welch, Colin R. Simpson, Nigel French, Edward C. Holmes, Joep de Ligt
Published 2021-05-01

Characterising the epidemic spread of influenza A/H3N2 within a city through phylogenetics.

by Nicola F Müller, Daniel Wüthrich, Nina Goldman, Nadine Sailer, Claudia Saalfrank, Myrta Brunner, Noémi Augustin, Helena Mb Seth-Smith, Yvonne Hollenstein, Mohammedyaseen Syedbasha, Daniela Lang, Richard A Neher, Olivier Dubuis, Michael Naegele, Andreas Buser, Christian H Nickel, Nicole Ritz, Andreas Zeller, Brian M Lang, James Hadfield, Trevor Bedford, Manuel Battegay, Rita Schneider-Sliwa, Adrian Egli, Tanja Stadler
Published 2020-11-01

Genomic Evidence of In-Flight Transmission of SARS-CoV-2 Despite Predeparture Testing

by Tara Swadi, Jemma L. Geoghegan, Tom Devine, Caroline McElnay, Jillian Sherwood, Phil Shoemack, Xiaoyun Ren, Matt Storey, Sarah Jefferies, Erasmus Smit, James Hadfield, Aoife Kenny, Lauren Jelley, Andrew Sporle, Andrea McNeill, G. Edwin Reynolds, Kip Mouldey, Lindsay Lowe, Gerard Sonder, Alexei J. Drummond, Sue Huang, David Welch, Edward C. Holmes, Nigel French, Colin R. Simpson, Joep de Ligt
Published 2021-03-01