Temporal, Environmental, and Biological Drivers of the Mucosal Microbiome in a Wild Marine Fish, Scomber japonicus

by Jeremiah J. Minich, Semar Petrus, Julius D. Michael, Todd P. Michael, Rob Knight, Eric E. Allen
Published 2020-05-01

High-Throughput Miniaturized 16S rRNA Amplicon Library Preparation Reduces Costs while Preserving Microbiome Integrity

by Jeremiah J. Minich, Greg Humphrey, Rodolfo A. S. Benitez, Jon Sanders, Austin Swafford, Eric E. Allen, Rob Knight
Published 2018-11-01

Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption.

by Jeremiah J Minich, Megan M Morris, Matt Brown, Michael Doane, Matthew S Edwards, Todd P Michael, Elizabeth A Dinsdale
Published 2018-01-01

Microbiome and Metagenome Analyses of a Closed Habitat during Human Occupation

by Ganesh Babu Malli Mohan, Ceth W. Parker, Camilla Urbaniak, Nitin K. Singh, Anthony Hood, Jeremiah J. Minich, Rob Knight, Michelle Rucker, Kasthuri Venkateswaran
Published 2020-07-01

Impacts of the Marine Hatchery Built Environment, Water and Feed on Mucosal Microbiome Colonization Across Ontogeny in Yellowtail Kingfish, Seriola lalandi

by Jeremiah J. Minich, Barbara Nowak, Abigail Elizur, Rob Knight, Rob Knight, Rob Knight, Rob Knight, Stewart Fielder, Eric E. Allen, Eric E. Allen, Eric E. Allen
Published 2021-05-01

KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples

by Jeremiah J. Minich, Qiyun Zhu, Stefan Janssen, Ryan Hendrickson, Amnon Amir, Russ Vetter, John Hyde, Megan M. Doty, Kristina Stillwell, James Benardini, Jae H. Kim, Eric E. Allen, Kasthuri Venkateswaran, Rob Knight
Published 2018-03-01

The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment

by Jeremiah J. Minich, Cecilia Power, Michaela Melanson, Rob Knight, Rob Knight, Rob Knight, Rob Knight, Claire Webber, Kirsten Rough, Nathan J. Bott, Barbara Nowak, Barbara Nowak, Eric E. Allen, Eric E. Allen, Eric E. Allen
Published 2020-08-01

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment

by Jeremiah J. Minich, Farhana Ali, Clarisse Marotz, Pedro Belda-Ferre, Leslie Chiang, Justin P. Shaffer, Carolina S. Carpenter, Daniel McDonald, Jack Gilbert, Sarah M. Allard, Eric E. Allen, Rob Knight, Daniel A. Sweeney, Austin D. Swafford
Published 2021-01-01

From Sample to Multi-Omics Conclusions in under 48 Hours

by Robert A. Quinn, Jose A. Navas-Molina, Embriette R. Hyde, Se Jin Song, Yoshiki Vázquez-Baeza, Greg Humphrey, James Gaffney, Jeremiah J. Minich, Alexey V. Melnik, Jakob Herschend, Jeff DeReus, Austin Durant, Rachel J. Dutton, Mahdieh Khosroheidari, Clifford Green, Ricardo da Silva, Pieter C. Dorrestein, Rob Knight, Jack A. Gilbert
Published 2016-04-01