A primer on regression methods for decoding cis-regulatory logic.

by Debopriya Das, Matteo Pellegrini, Joe W Gray
Published 2009-01-01

Expanding the Diversity of Imaging-Based RNAi Screen Applications Using Cell Spot Microarrays

by Joe W. Gray, James Korkola, Juha K. Rantala, Sunjong Kwon
Published 2013-04-01

Lack of acquired resistance in HER2-positive breast cancer cells after long-term HER2 siRNA nanoparticle treatment.

by Shenda Gu, Worapol Ngamcherdtrakul, Moataz Reda, Zhi Hu, Joe W Gray, Wassana Yantasee
Published 2018-01-01

Toward reproducible, scalable, and robust data analysis across multiplex tissue imaging platforms

by Erik A. Burlingame, Jennifer Eng, Guillaume Thibault, Koei Chin, Joe W. Gray, Young Hwan Chang
Published 2021-08-01

Magellan: A Web Based System for the Integrated Analysis of Heterogeneous Biological Data and Annotations; Application to DNA Copy Number and Expression Data in Ovarian Cancer

by Chris B. Kingsley, Wen-Lin Kuo, Daniel Polikoff, Andy Berchuck, Joe W. Gray, Ajay N. Jain
Published 2006-01-01

Magellan: A Web Based System for the Integrated Analysis of Heterogeneous Biological Data and Annotations; Application to DNA Copy Number and Expression Data in Ovarian Cancer

by Chris B. Kingsley, Wen-Lin Kuo, Daniel Polikoff, Andy Berchuck, Joe W. Gray, Ajay N. Jain
Published 2006-01-01

Disentangling multidimensional spatio-temporal data into their common and aberrant responses.

by Young Hwan Chang, James Korkola, Dhara N Amin, Mark M Moasser, Jose M Carmena, Joe W Gray, Claire J Tomlin
Published 2015-01-01

Quantitating morphological changes in biological samples during scanning electron microscopy sample preparation with correlative super-resolution microscopy.

by Ying Zhang, Tao Huang, Danielle M Jorgens, Andrew Nickerson, Li-Jung Lin, Joshua Pelz, Joe W Gray, Claudia S López, Xiaolin Nan
Published 2017-01-01

Genetic differences in transcript responses to low-dose ionizing radiation identify tissue functions associated with breast cancer susceptibility.

by Antoine M Snijders, Francesco Marchetti, Sandhya Bhatnagar, Nadire Duru, Ju Han, Zhi Hu, Jian-Hua Mao, Joe W Gray, Andrew J Wyrobek
Published 2012-01-01

Do breast cancer cell lines provide a relevant model of the patient tumor methylome?

by Leslie M Cope, Mary Jo Fackler, Zoila Lopez-Bujanda, Antonio C Wolff, Kala Visvanathan, Joe W Gray, Saraswati Sukumar, Christopher B Umbricht
Published 2014-01-01

Molecular predictors of 3D morphogenesis by breast cancer cell lines in 3D culture.

by Ju Han, Hang Chang, Orsi Giricz, Genee Y Lee, Frederick L Baehner, Joe W Gray, Mina J Bissell, Paraic A Kenny, Bahram Parvin
Published 2010-02-01

High-throughput, single-particle tracking reveals nested membrane domains that dictate KRasG12D diffusion and trafficking

by Yerim Lee, Carey Phelps, Tao Huang, Barmak Mostofian, Lei Wu, Ying Zhang, Kai Tao, Young Hwan Chang, Philip JS Stork, Joe W Gray, Daniel M Zuckerman, Xiaolin Nan
Published 2019-11-01

Exome Sequencing of Cell-Free DNA from Metastatic Cancer Patients Identifies Clinically Actionable Mutations Distinct from Primary Disease.

by Timothy M Butler, Katherine Johnson-Camacho, Myron Peto, Nicholas J Wang, Tara A Macey, James E Korkola, Theresa M Koppie, Christopher L Corless, Joe W Gray, Paul T Spellman
Published 2015-01-01

ATM suppresses SATB1-induced malignant progression in breast epithelial cells.

by Ellen Ordinario, Hye-Jung Han, Saori Furuta, Laura M Heiser, Lakshmi R Jakkula, Francis Rodier, Paul T Spellman, Judith Campisi, Joe W Gray, Mina J Bissell, Yoshinori Kohwi, Terumi Kohwi-Shigematsu
Published 2012-01-01

Linking changes in epithelial morphogenesis to cancer mutations using computational modeling.

by Katarzyna A Rejniak, Shizhen E Wang, Nicole S Bryce, Hang Chang, Bahram Parvin, Jerome Jourquin, Lourdes Estrada, Joe W Gray, Carlos L Arteaga, Alissa M Weaver, Vito Quaranta, Alexander R A Anderson
Published 2010-08-01

Activity of distinct growth factor receptor network components in breast tumors uncovers two biologically relevant subtypes

by Mumtahena Rahman, Shelley M. MacNeil, David F. Jenkins, Gajendra Shrestha, Sydney R. Wyatt, Jasmine A. McQuerry, Stephen R. Piccolo, Laura M. Heiser, Joe W. Gray, W. Evan Johnson, Andrea H. Bild
Published 2017-04-01

DIRAS3 (ARHI) Blocks RAS/MAPK Signaling by Binding Directly to RAS and Disrupting RAS Clusters

by Margie N. Sutton, Zhen Lu, Yao-Cheng Li, Yong Zhou, Tao Huang, Albert S. Reger, Amy M. Hurwitz, Timothy Palzkill, Craig Logsdon, Xiaowen Liang, Joe W. Gray, Xiaolin Nan, John Hancock, Geoffrey M. Wahl, Robert C. Bast, Jr.
Published 2019-12-01

Sensitivity to targeted therapy differs between HER2-amplified breast cancer cells harboring kinase and helical domain mutations in PIK3CA

by Joseph P. Garay, Rebecca Smith, Kaylyn Devlin, Daniel P. Hollern, Tiera Liby, Moqing Liu, Shanta Boddapati, Spencer S. Watson, Amanda Esch, Ting Zheng, Wallace Thompson, Darcie Babcock, Sunjong Kwon, Koei Chin, Laura Heiser, Joe W. Gray, James E. Korkola
Published 2021-08-01

Genome wide DNA copy number analysis of serous type ovarian carcinomas identifies genetic markers predictive of clinical outcome.

by David A Engler, Sumeet Gupta, Whitfield B Growdon, Ronny I Drapkin, Mai Nitta, Petra A Sergent, Serena F Allred, Jenny Gross, Michael T Deavers, Wen-Lin Kuo, Beth Y Karlan, Bo R Rueda, Sandra Orsulic, David M Gershenson, Michael J Birrer, Joe W Gray, Gayatry Mohapatra
Published 2012-01-01

Implementing a comprehensive translational oncology platform: from molecular testing to actionability

by Zahi I. Mitri, Swapnil Parmar, Brett Johnson, Annette Kolodzie, Jamie M. Keck, Max Morris, Alexander R. Guimaraes, Brooke R. Beckett, Uma Borate, Charles D. Lopez, Kathleen A. Kemmer, Joshi J. Alumkal, Tomasz M. Beer, Christopher L. Corless, Gordon B. Mills, Joe W. Gray, Raymond C. Bergan
Published 2018-12-01