A comprehensive estimation of country-level basic reproduction numbers R0 for COVID-19: Regime regression can automatically estimate the end of the exponential phase in epidemic da...

by John L Spouge
Published 2021-01-01

Structural prediction of RNA switches using conditional base-pair probabilities.

by Amirhossein Manzourolajdad, John L Spouge
Published 2019-01-01

Estimating the basic reproduction number of a pathogen in a single host when only a single founder successfully infects.

by Vruj Patel, John L Spouge
Published 2020-01-01

Coalescent: an open-science framework for importance sampling in coalescent theory

by Susanta Tewari, John L. Spouge
Published 2015-08-01

Changes in the Plasticity of HIV-1 Nef RNA during the Evolution of the North American Epidemic.

by Amirhossein Manzourolajdad, Mileidy Gonzalez, John L Spouge
Published 2016-01-01

MultiDomainBenchmark: a multi-domain query and subject database suite

by Hyrum D. Carroll, John L. Spouge, Mileidy Gonzalez
Published 2019-02-01

A linear-time algorithm that avoids inverses and computes Jackknife (leave-one-out) products like convolutions or other operators in commutative semigroups

by John L. Spouge, Joseph M. Ziegelbauer, Mileidy Gonzalez
Published 2020-09-01

Figures of merit and statistics for detecting faulty species identification with DNA barcodes: A case study in Ramaria and related fungal genera.

by María P Martín, Pablo P Daniëls, David Erickson, John L Spouge
Published 2020-01-01

Fungi in Thailand: a case study of the efficacy of an ITS barcode for automatically identifying species within the Annulohypoxylon and Hypoxylon genera.

by Nuttika Suwannasai, María P Martín, Cherdchai Phosri, Prakitsin Sihanonth, Anthony J S Whalley, John L Spouge
Published 2013-01-01

Alignment-free genome comparison enables accurate geographic sourcing of white oak DNA

by Kujin Tang, Jie Ren, Richard Cronn, David L. Erickson, Brook G. Milligan, Meaghan Parker-Forney, John L. Spouge, Fengzhu Sun
Published 2018-12-01

CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms.

by Jan Pawlowski, Stéphane Audic, Sina Adl, David Bass, Lassaâd Belbahri, Cédric Berney, Samuel S Bowser, Ivan Cepicka, Johan Decelle, Micah Dunthorn, Anna Maria Fiore-Donno, Gillian H Gile, Maria Holzmann, Regine Jahn, Miloslav Jirků, Patrick J Keeling, Martin Kostka, Alexander Kudryavtsev, Enrique Lara, Julius Lukeš, David G Mann, Edward A D Mitchell, Frank Nitsche, Maria Romeralo, Gary W Saunders, Alastair G B Simpson, Alexey V Smirnov, Alexey V Smirnov, John L Spouge, Rowena F Stern, Thorsten Stoeck, Jonas Zimmermann, David Schindel, Colomban de Vargas
Published 2012-01-01

Dual DNA Barcoding for the Molecular Identification of the Agents of Invasive Fungal Infections

by Minh Thuy Vi Hoang, Minh Thuy Vi Hoang, Laszlo Irinyi, Laszlo Irinyi, Laszlo Irinyi, Sharon C. A. Chen, Sharon C. A. Chen, Sharon C. A. Chen, Tania C. Sorrell, Tania C. Sorrell, Tania C. Sorrell, The ISHAM Barcoding of Medical Fungi Working Group, Wieland Meyer, Wieland Meyer, Wieland Meyer, Wieland Meyer, Michael Arabatzis, Ian Arthur, Jose F. Cano-Lira, Gianluigi Cardinali, Laura Rosio Castañón, Sharon Chen, Wen Chen, Ariya Chindamporn, Arnaldo L. Colombo, Marie Desnos-Ollivier, Wilhelm de Beer, Sybren de Hoog, Françoise Dromer, Dea Garcia-Hermoso, Marieka Gryzenhout, Josep Guarro, Catriona Halliday, Marijke Hendrickx, Sabine Huhndorf, Laszlo Irinyi, C. Andre Levesque, Wieland Meyer, Maria Luiza Moretti, Mauro de Medeiros Muniz, Analy Salles de Azevedo Melo, Angela Satie Nishikaku, Anne-Cécile Normand, Célia Pais, Renaud Piarroux, Stéphane Ranque, Barbara Robbertse, Vincent Robert, Conrad L. Schoch, Keith A. Seifert, Célia Maria de Almeida Soares, Tania C. Sorrell, John L. Spouge, Dirk Stubbe, Maria Lucia Taylor, Conchita Toriello, Aristea Velegraki, Chompoonek Yurayart, Rosely Maria Zancopé-Oliveira
Published 2019-07-01