Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly

by Joyce B. Kang, Benjamin A. Siranosian, Eli L. Moss, Niaz Banaei, Tessa M. Andermann, Ami S. Bhatt
Published 2019-12-01

Efficient and precise single-cell reference atlas mapping with Symphony

by Joyce B. Kang, Aparna Nathan, Kathryn Weinand, Fan Zhang, Nghia Millard, Laurie Rumker, D. Branch Moody, Ilya Korsunsky, Soumya Raychaudhuri
Published 2021-10-01

Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale

by Soumaya Zlitni, Alex Bishara, Eli L. Moss, Ekaterina Tkachenko, Joyce B. Kang, Rebecca N. Culver, Tessa M. Andermann, Ziming Weng, Christina Wood, Christine Handy, Hanlee P. Ji, Serafim Batzoglou, Ami S. Bhatt
Published 2020-05-01

Whole blood RNA sequencing reveals a unique transcriptomic profile in patients with ARDS following hematopoietic stem cell transplantation

by Joshua A. Englert, Michael H. Cho, Andrew E. Lamb, Maya Shumyatcher, Diana Barragan-Bradford, Maria C. Basil, Angelica Higuera, Colleen Isabelle, Mayra Pinilla Vera, Paul B. Dieffenbach, Laura E. Fredenburgh, Joyce B. Kang, Ami S. Bhatt, Joseph H. Antin, Vincent T. Ho, Robert J. Soiffer, Judie A. Howrylak, Blanca E. Himes, Rebecca M. Baron
Published 2019-01-01