Grafting or pruning in the animal tree: lateral gene transfer and gene loss?

by Julie C. Dunning Hotopp
Published 2018-06-01

The Complexities and Nuances of Analyzing the Genome of Drosophila ananassae and Its Wolbachia Endosymbiont

by Julie C. Dunning Hotopp, Lisa Klasson
Published 2018-01-01

Targeted Enrichment and Sequencing of Recent Endosymbiont-Host Lateral Gene Transfers

by Julie C. Dunning Hotopp, Barton E. Slatko, Jeremy M. Foster
Published 2017-04-01

A review of bacteria-animal lateral gene transfer may inform our understanding of diseases like cancer.

by Kelly M Robinson, Karsten B Sieber, Julie C Dunning Hotopp
Published 2013-01-01

Using Core Genome Alignments To Assign Bacterial Species

by Matthew Chung, James B. Munro, Hervé Tettelin, Julie C. Dunning Hotopp
Published 2018-12-01

Bacteria-human somatic cell lateral gene transfer is enriched in cancer samples.

by David R Riley, Karsten B Sieber, Kelly M Robinson, James Robert White, Ashwinkumar Ganesan, Syrus Nourbakhsh, Julie C Dunning Hotopp
Published 2013-01-01

Streptococcus pneumoniae in biofilms are unable to cause invasive disease due to altered virulence determinant production.

by Carlos J Sanchez, Nikhil Kumar, Anel Lizcano, Pooja Shivshankar, Julie C Dunning Hotopp, James H Jorgensen, Hervé Tettelin, Carlos J Orihuela
Published 2011-01-01

Brood ball-mediated transmission of microbiome members in the dung beetle, Onthophagus taurus (Coleoptera: Scarabaeidae).

by Anne M Estes, David J Hearn, Emilie C Snell-Rood, Michele Feindler, Karla Feeser, Tselotie Abebe, Julie C Dunning Hotopp, Armin P Moczek
Published 2013-01-01

Best practices on the differential expression analysis of multi-species RNA-seq

by Matthew Chung, Vincent M. Bruno, David A. Rasko, Christina A. Cuomo, José F. Muñoz, Jonathan Livny, Amol C. Shetty, Anup Mahurkar, Julie C. Dunning Hotopp
Published 2021-04-01

Evaluation of a high-throughput, cost-effective Illumina library preparation kit

by Eric S. Tvedte, Jane Michalski, Shaoji Cheng, Rayanna S. Patkus, Luke J. Tallon, Lisa Sadzewicz, Vincent M. Bruno, Joana C. Silva, David A. Rasko, Julie C. Dunning Hotopp
Published 2021-08-01

Whole genome sequencing to investigate the emergence of clonal complex 23 Neisseria meningitidis serogroup Y disease in the United States.

by Mary G Krauland, Julie C Dunning Hotopp, David R Riley, Sean C Daugherty, Jane W Marsh, Nancy E Messonnier, Leonard W Mayer, Hervé Tettelin, Lee H Harrison
Published 2012-01-01

Molecular epidemiology of Neisseria meningitidis serogroup B in Brazil.

by Ivano de Filippis, Ana Paula S de Lemos, Jessica B Hostetler, Kurt Wollenberg, Claudio T Sacchi, Julie C Dunning Hotopp, Lee H Harrison, Margaret C Bash, D Rebecca Prevots
Published 2012-01-01

In Vivo-Selected Compensatory Mutations Restore the Fitness Cost of Mosaic penA Alleles That Confer Ceftriaxone Resistance in Neisseria gonorrhoeae

by Leah R. Vincent, Samuel R. Kerr, Yang Tan, Joshua Tomberg, Erica L. Raterman, Julie C. Dunning Hotopp, Magnus Unemo, Robert A. Nicholas, Ann E. Jerse, Michael S. Gilmore
Published 2018-04-01

A Meta-Analysis of Wolbachia Transcriptomics Reveals a Stage-Specific Wolbachia Transcriptional Response Shared Across Different Hosts

by Matthew Chung, Preston J. Basting, Rayanna S. Patkus, Alexandra Grote, Ashley N. Luck, Elodie Ghedin, Barton E. Slatko, Michelle Michalski, Jeremy M. Foster, Casey M. Bergman, Julie C. Dunning Hotopp
Published 2020-09-01

Comparative Analysis of Genome of Ehrlichia sp. HF, a Model Bacterium to Study Fatal Human Ehrlichiosis

by Mingqun Lin, Qingming Xiong, Matthew Chung, Sean C. Daugherty, Sushma Nagaraj, Naomi Sengamalay, Sandra Ott, Al Godinez, Luke J. Tallon, Lisa Sadzewicz, Claire Fraser, Julie C. Dunning Hotopp, Yasuko Rikihisa
Published 2021-01-01

FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses

by Matthew Chung, Ricky S. Adkins, John S. A. Mattick, Katie R. Bradwell, Amol C. Shetty, Lisa Sadzewicz, Luke J. Tallon, Claire M. Fraser, David A. Rasko, Anup Mahurkar, Julie C. Dunning Hotopp
Published 2021-02-01

Drug Repurposing of Bromodomain Inhibitors as Potential Novel Therapeutic Leads for Lymphatic Filariasis Guided by Multispecies Transcriptomics

by Matthew Chung, Laura E. Teigen, Silvia Libro, Robin E. Bromley, Dustin Olley, Nikhil Kumar, Lisa Sadzewicz, Luke J. Tallon, Anup Mahurkar, Jeremy M. Foster, Michelle L. Michalski, Julie C. Dunning Hotopp
Published 2019-12-01

Genomic Epidemiology of Hypervirulent Serogroup W, ST-11 Neisseria meningitidis

by Mustapha M. Mustapha, Jane W. Marsh, Mary G. Krauland, Jorge O. Fernandez, Ana Paula S. de Lemos, Julie C. Dunning Hotopp, Xin Wang, Leonard W. Mayer, Jeffrey G. Lawrence, N. Luisa Hiller, Lee H. Harrison
Published 2015-10-01

Endosymbiont DNA in endobacteria-free filarial nematodes indicates ancient horizontal genetic transfer.

by Samantha N McNulty, Jeremy M Foster, Makedonka Mitreva, Julie C Dunning Hotopp, John Martin, Kerstin Fischer, Bo Wu, Paul J Davis, Sanjay Kumar, Norbert W Brattig, Barton E Slatko, Gary J Weil, Peter U Fischer
Published 2010-06-01

Sex chromosome evolution in parasitic nematodes of humans

by Jeremy M. Foster, Alexandra Grote, John Mattick, Alan Tracey, Yu-Chih Tsai, Matthew Chung, James A. Cotton, Tyson A. Clark, Adam Geber, Nancy Holroyd, Jonas Korlach, Yichao Li, Silvia Libro, Sara Lustigman, Michelle L. Michalski, Michael Paulini, Matthew B. Rogers, Laura Teigen, Alan Twaddle, Lonnie Welch, Matthew Berriman, Julie C. Dunning Hotopp, Elodie Ghedin
Published 2020-04-01