Naught all zeros in sequence count data are the same

by Justin D. Silverman, Kimberly Roche, Sayan Mukherjee, Lawrence A. David
Published 2020-01-01

A phylogenetic transform enhances analysis of compositional microbiota data

by Justin D Silverman, Alex D Washburne, Sayan Mukherjee, Lawrence A David
Published 2017-02-01

Dynamic linear models guide design and analysis of microbiota studies within artificial human guts

by Justin D. Silverman, Heather K. Durand, Rachael J. Bloom, Sayan Mukherjee, Lawrence A. David
Published 2018-11-01

Correction to: Dynamic linear models guide design and analysis of microbiota studies within artificial human guts

by Justin D. Silverman, Heather K. Durand, Rachael J. Bloom, Sayan Mukherjee, Lawrence A. David
Published 2018-11-01

Modeling the temporal dynamics of the gut microbial community in adults and infants.

by Liat Shenhav, Ori Furman, Leah Briscoe, Mike Thompson, Justin D Silverman, Itzhak Mizrahi, Eran Halperin
Published 2019-06-01

Measuring and mitigating PCR bias in microbiota datasets.

by Justin D Silverman, Rachael J Bloom, Sharon Jiang, Heather K Durand, Eric Dallow, Sayan Mukherjee, Lawrence A David
Published 2021-07-01

Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets

by Alex D. Washburne, Justin D. Silverman, Jonathan W. Leff, Dominic J. Bennett, John L. Darcy, Sayan Mukherjee, Noah Fierer, Lawrence A. David
Published 2017-02-01

DNA Extraction and Host Depletion Methods Significantly Impact and Potentially Bias Bacterial Detection in a Biological Fluid

by Erika Ganda, Kristen L. Beck, Niina Haiminen, Justin D. Silverman, Ban Kawas, Brittany D. Cronk, Renee R. Anderson, Laura B. Goodman, Martin Wiedmann
Published 2021-06-01

Short-Chain Fatty Acid Production by Gut Microbiota from Children with Obesity Differs According to Prebiotic Choice and Bacterial Community Composition

by Zachary C. Holmes, Justin D. Silverman, Holly K. Dressman, Zhengzheng Wei, Eric P. Dallow, Sarah C. Armstrong, Patrick C. Seed, John F. Rawls, Lawrence A. David
Published 2020-08-01

Interindividual Variation in Dietary Carbohydrate Metabolism by Gut Bacteria Revealed with Droplet Microfluidic Culture

by Max M. Villa, Rachael J. Bloom, Justin D. Silverman, Heather K. Durand, Sharon Jiang, Anchi Wu, Eric P. Dallow, Shuqiang Huang, Lingchong You, Lawrence A. David
Published 2020-06-01