A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes.

by Daniel H Haft, Jeremy Selengut, Emmanuel F Mongodin, Karen E Nelson
Published 2005-11-01

Forensic Microbiome Database: A Tool for Forensic Geolocation Meta-Analysis Using Publicly Available 16S rRNA Microbiome Sequencing

by Harinder Singh, Thomas Clarke, Lauren Brinkac, Chris Greco, Karen E. Nelson
Published 2021-03-01

Host-Microbial Interactions in Systemic Lupus Erythematosus and Periodontitis

by Larissa Pessoa, Gajender Aleti, Saibyasachi Choudhury, Daniel Nguyen, Tina Yaskell, Yun Zhang, Weizhong Li, Karen E. Nelson, Karen E. Nelson, Leopoldo Luiz Santos Neto, Adriana C. P. Sant'Ana, Marcelo Freire
Published 2019-11-01

Urethral Catheter Biofilms Reveal Plasticity in Bacterial Composition and Metabolism and Withstand Host Immune Defenses in Hypoxic Environment

by Yanbao Yu, Harinder Singh, Tamara Tsitrin, Shiferaw Bekele, Yi-Han Lin, Patricia Sikorski, Kelvin J. Moncera, Manolito G. Torralba, Lisa Morrow, Randall Wolcott, Karen E. Nelson, Karen E. Nelson, Rembert Pieper
Published 2021-06-01

Characterization of Early-Phase Neutrophil Extracellular Traps in Urinary Tract Infections.

by Yanbao Yu, Keehwan Kwon, Tamara Tsitrin, Shiferaw Bekele, Patricia Sikorski, Karen E Nelson, Rembert Pieper
Published 2017-01-01

OMeta: an ontology-based, data-driven metadata tracking system

by Indresh Singh, Mehmet Kuscuoglu, Derek M. Harkins, Granger Sutton, Derrick E. Fouts, Karen E. Nelson
Published 2019-01-01

Utilization of defined microbial communities enables effective evaluation of meta-genomic assemblies

by William W. Greenwald, Niels Klitgord, Victor Seguritan, Shibu Yooseph, J. Craig Venter, Chad Garner, Karen E. Nelson, Weizhong Li
Published 2017-04-01

Xylitol and sorbitol effects on the microbiome of saliva and plaque

by Reisha Rafeek, Christine V. F. Carrington, Andres Gomez, Derek Harkins, Manolito Torralba, Claire Kuelbs, Jonas Addae, Ahmed Moustafa, Karen E. Nelson
Published 2019-01-01

Robust computational analysis of rRNA hypervariable tag datasets.

by Maksim Sipos, Patricio Jeraldo, Nicholas Chia, Ani Qu, A Singh Dhillon, Michael E Konkel, Karen E Nelson, Bryan A White, Nigel Goldenfeld
Published 2010-01-01

Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen.

by Derrick E Fouts, Sebastian Szpakowski, Janaki Purushe, Manolito Torralba, Richard C Waterman, Michael D MacNeil, Leeson J Alexander, Karen E Nelson
Published 2012-01-01

The blood DNA virome in 8,000 humans.

by Ahmed Moustafa, Chao Xie, Ewen Kirkness, William Biggs, Emily Wong, Yaron Turpaz, Kenneth Bloom, Eric Delwart, Karen E Nelson, J Craig Venter, Amalio Telenti
Published 2017-03-01

The Human Microbiome Project: a community resource for the healthy human microbiome.

by Dirk Gevers, Rob Knight, Joseph F Petrosino, Katherine Huang, Amy L McGuire, Bruce W Birren, Karen E Nelson, Owen White, Barbara A Methé, Curtis Huttenhower
Published 2012-01-01

Relationships Between Gastrointestinal Parasite Infections and the Fecal Microbiome in Free-Ranging Western Lowland Gorillas

by Klára Vlčková, Klára Vlčková, Barbora Pafčo, Klára J. Petrželková, Klára J. Petrželková, Klára J. Petrželková, David Modrý, David Modrý, David Modrý, Angelique Todd, Carl J. Yeoman, Manolito Torralba, Brenda A. Wilson, Brenda A. Wilson, Rebecca M. Stumpf, Rebecca M. Stumpf, Bryan A. White, Karen E. Nelson, Karen E. Nelson, Steven R. Leigh, Steven R. Leigh, Andres Gomez
Published 2018-06-01

Characterization of the fecal microbiome from non-human wild primates reveals species specific microbial communities.

by Suleyman Yildirim, Carl J Yeoman, Maksim Sipos, Manolito Torralba, Brenda A Wilson, Tony L Goldberg, Rebecca M Stumpf, Steven R Leigh, Bryan A White, Karen E Nelson
Published 2010-01-01

Pregnancy's stronghold on the vaginal microbiome.

by Marina R S Walther-António, Patricio Jeraldo, Margret E Berg Miller, Carl J Yeoman, Karen E Nelson, Brenda A Wilson, Bryan A White, Nicholas Chia, Douglas J Creedon
Published 2014-01-01

Towards an Evolutionary Model of Animal-Associated Microbiomes

by Bryan A. White, Brenda A. Wilson, Steven R. Leigh, Karen E. Nelson, Angela Kent, Rebecca Stumpf, Carl J. Yeoman, Nicholas Chia, Suleyman Yildirim, Margret E. Berg Miller
Published 2011-02-01

Where next for microbiome research?

by Matthew K Waldor, Gene Tyson, Elhanan Borenstein, Howard Ochman, Andrew Moeller, B Brett Finlay, Heidi H Kong, Jeffrey I Gordon, Karen E Nelson, Karim Dabbagh, Hamilton Smith
Published 2015-01-01

Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach.

by Josh L Espinoza, Chris L Dupont, Aubrie O'Rourke, Sinem Beyhan, Pavel Morales, Amy Spoering, Kirsten J Meyer, Agnes P Chan, Yongwook Choi, William C Nierman, Kim Lewis, Karen E Nelson
Published 2021-03-01

Interplay between the human gut microbiome and host metabolism

by Alessia Visconti, Caroline I. Le Roy, Fabio Rosa, Niccolò Rossi, Tiphaine C. Martin, Robert P. Mohney, Weizhong Li, Emanuele de Rinaldis, Jordana T. Bell, J. Craig Venter, Karen E. Nelson, Tim D. Spector, Mario Falchi
Published 2019-10-01

Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome.

by Ani Qu, Jennifer M Brulc, Melissa K Wilson, Bibiana F Law, James R Theoret, Lynn A Joens, Michael E Konkel, Florent Angly, Elizabeth A Dinsdale, Robert A Edwards, Karen E Nelson, Bryan A White
Published 2008-08-01