Leptospiral Pathogenomics

by Jason S. Lehmann, Michael A. Matthias, Joseph M. Vinetz, Derrick E. Fouts
Published 2014-04-01

Enterobacter hormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is a...

by Granger G. Sutton, Lauren M. Brinkac, Thomas H. Clarke, Derrick E. Fouts
Published 2018-06-01

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes

by Thomas H. Clarke, Lauren M. Brinkac, Jason M. Inman, Granger Sutton, Derrick E. Fouts
Published 2018-06-01

Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients

by Sonja Lang, Bradley Fairfied, Bei Gao, Yi Duan, Xinlian Zhang, Derrick E. Fouts, Bernd Schnabl
Published 2020-11-01

OMeta: an ontology-based, data-driven metadata tracking system

by Indresh Singh, Mehmet Kuscuoglu, Derek M. Harkins, Granger Sutton, Derrick E. Fouts, Karen E. Nelson
Published 2019-01-01

Emergence of New Delhi Metallo-β-Lactamase (NDM-5) in Klebsiella quasipneumoniae from Neonates in a Nigerian Hospital

by Lauren M. Brinkac, Richard White, Roshan D’Souza, Kevin Nguyen, Stephen K. Obaro, Derrick E. Fouts
Published 2019-03-01

Intestinal and hepatic microbiota changes associated with chronic ethanol administration in mice

by Sena Bluemel, Lirui Wang, Claire Kuelbs, Kelvin Moncera, Manolito Torralba, Harinder Singh, Derrick E. Fouts, Bernd Schnabl
Published 2020-05-01

Genomic and clinical characterisation of multidrug-resistant carbapenemase-producing ST231 and ST16 Klebsiella pneumoniae isolates colonising patients at Siriraj hospital, Bangkok,...

by Adhiratha Boonyasiri, Elita Jauneikaite, Lauren M. Brinkac, Chris Greco, Kanokorn Lerdlamyong, Teerawit Tangkoskul, Kevin Nguyen, Visanu Thamlikitkul, Derrick E. Fouts
Published 2021-02-01

Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen.

by Derrick E Fouts, Sebastian Szpakowski, Janaki Purushe, Manolito Torralba, Richard C Waterman, Michael D MacNeil, Leeson J Alexander, Karen E Nelson
Published 2012-01-01

Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs.

by Rachel A F Wozniak, Derrick E Fouts, Matteo Spagnoletti, Mauro M Colombo, Daniela Ceccarelli, Geneviève Garriss, Christine Déry, Vincent Burrus, Matthew K Waldor
Published 2009-12-01

Comprehensive Genome Analysis of Carbapenemase-Producing Enterobacter spp.: New Insights into Phylogeny, Population Structure, and Resistance Mechanisms

by Kalyan D. Chavda, Liang Chen, Derrick E. Fouts, Granger Sutton, Lauren Brinkac, Stephen G. Jenkins, Robert A. Bonomo, Mark D. Adams, Barry N. Kreiswirth
Published 2016-12-01

Rapid Replacement of Acinetobacter baumannii Strains Accompanied by Changes in Lipooligosaccharide Loci and Resistance Gene Repertoire

by Mark D. Adams, Meredith S. Wright, James K. Karichu, Pratap Venepally, Derrick E. Fouts, Agnes P. Chan, Sandra S. Richter, Michael R. Jacobs, Robert A. Bonomo
Published 2019-03-01

Population Structure, Molecular Epidemiology, and β-Lactamase Diversity among Stenotrophomonas maltophilia Isolates in the United States

by Maria F. Mojica, Joseph D. Rutter, Magdalena Taracila, Luciano A. Abriata, Derrick E. Fouts, Krisztina M. Papp-Wallace, Thomas J. Walsh, John J. LiPuma, Alejandro J. Vila, Robert A. Bonomo
Published 2019-07-01

Pathogenomic inference of virulence-associated genes in Leptospira interrogans.

by Jason S Lehmann, Derrick E Fouts, Daniel H Haft, Anthony P Cannella, Jessica N Ricaldi, Lauren Brinkac, Derek Harkins, Scott Durkin, Ravi Sanka, Granger Sutton, Angelo Moreno, Joseph M Vinetz, Michael A Matthias
Published 2013-01-01

Dynamic Changes of the Fungal Microbiome in Alcohol Use Disorder

by Phillipp Hartmann, Phillipp Hartmann, Sonja Lang, Suling Zeng, Suling Zeng, Yi Duan, Xinlian Zhang, Yanhan Wang, Yanhan Wang, Marina Bondareva, Marina Bondareva, Andrey Kruglov, Derrick E. Fouts, Peter Stärkel, Bernd Schnabl, Bernd Schnabl
Published 2021-07-01

Whole genome analysis of Leptospira licerasiae provides insight into leptospiral evolution and pathogenicity.

by Jessica N Ricaldi, Derrick E Fouts, Jeremy D Selengut, Derek M Harkins, Kailash P Patra, Angelo Moreno, Jason S Lehmann, Janaki Purushe, Ravi Sanka, Michael Torres, Nicholas J Webster, Joseph M Vinetz, Michael A Matthias
Published 2012-01-01

In Vitro Activity of a Novel Siderophore-Cephalosporin LCB10-0200 (GT-1), and LCB10-0200/Avibactam, against Carbapenem-Resistant Escherichia coli, Klebsiella pneumoniae, Acinetobac...

by Le Phuong Nguyen, Chul Soon Park, Naina Adren Pinto, Hyunsook Lee, Hyun Soo Seo, Thao Nguyen Vu, Hung Mai, An H. T. Pham, Eris Jang, Young Lag Cho, Karrie Goglin, Kevin Nguyen, Richard White, Roshan D’Souza, Derrick E. Fouts, Dongeun Yong
Published 2021-04-01

Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice.

by Derrick E Fouts, Heather L Tyler, Robert T DeBoy, Sean Daugherty, Qinghu Ren, Jonathan H Badger, Anthony S Durkin, Heather Huot, Susmita Shrivastava, Sagar Kothari, Robert J Dodson, Yasmin Mohamoud, Hoda Khouri, Luiz F W Roesch, Karen A Krogfelt, Carsten Struve, Eric W Triplett, Barbara A Methé
Published 2008-07-01

Genomic Comparison Among Global Isolates of L. interrogans Serovars Copenhageni and Icterohaemorrhagiae Identified Natural Genetic Variation Caused by an Indel

by Luciane A. Santos, Luciane A. Santos, Haritha Adhikarla, Xiting Yan, Zheng Wang, Derrick E. Fouts, Joseph M. Vinetz, Luiz C. J. Alcantara, Rudy A. Hartskeerl, Marga G. A. Goris, Mathieu Picardeau, Mitermayer G. Reis, Jeffrey P. Townsend, Hongyu Zhao, Albert I. Ko, Albert I. Ko, Elsio A. Wunder, Elsio A. Wunder
Published 2018-06-01

Publisher Correction: Gastric acid suppression promotes alcoholic liver disease by inducing overgrowth of intestinal Enterococcus

by Cristina Llorente, Peter Jepsen, Tatsuo Inamine, Lirui Wang, Sena Bluemel, Hui J. Wang, Rohit Loomba, Jasmohan S. Bajaj, Mitchell L. Schubert, Masoumeh Sikaroodi, Patrick M. Gillevet, Jun Xu, Tatiana Kisseleva, Samuel B. Ho, Jessica DePew, Xin Du, Henrik T. Sørensen, Hendrik Vilstrup, Karen E. Nelson, David A. Brenner, Derrick E. Fouts, Bernd Schnabl
Published 2017-12-01