G2S3: A gene graph-based imputation method for single-cell RNA sequencing data.

by Weimiao Wu, Yunqing Liu, Qile Dai, Xiting Yan, Zuoheng Wang
Published 2021-05-01

Latent-space embedding of expression data identifies gene signatures from sputum samples of asthmatic patients

by Shaoke Lou, Tianxiao Li, Daniel Spakowicz, Xiting Yan, Geoffrey Lowell Chupp, Mark Gerstein
Published 2020-10-01

A novel pathway-based distance score enhances assessment of disease heterogeneity in gene expression

by Xiting Yan, Anqi Liang, Jose Gomez, Lauren Cohn, Hongyu Zhao, Geoffrey L. Chupp
Published 2017-06-01

Interplay of tRNA-Derived Fragments and T Cell Activation in Breast Cancer Patient Survival

by Nayang Shan, Ningshan Li, Qile Dai, Lin Hou, Xiting Yan, Amei Amei, Lingeng Lu, Zuoheng Wang
Published 2020-08-01

Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity.

by Li Jia, Benjamin P Berman, Unnati Jariwala, Xiting Yan, Jon P Cogan, Allison Walters, Ting Chen, Grant Buchanan, Baruch Frenkel, Gerhard A Coetzee
Published 2008-01-01

Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients

by Daniel Spakowicz, Shaoke Lou, Brian Barron, Jose L. Gomez, Tianxiao Li, Qing Liu, Nicole Grant, Xiting Yan, Rebecca Hoyd, George Weinstock, Geoffrey L. Chupp, Mark Gerstein
Published 2020-06-01

T cell-intrinsic role of IL-6 signaling in primary and memory responses

by Simone A Nish, Dominik Schenten, F Thomas Wunderlich, Scott D Pope, Yan Gao, Namiko Hoshi, Shuang Yu, Xiting Yan, Heung Kyu Lee, Lesley Pasman, Igor Brodsky, Brian Yordy, Hongyu Zhao, Jens Brüning, Ruslan Medzhitov
Published 2014-05-01

Single-cell characterization of a model of poly I:C-stimulated peripheral blood mononuclear cells in severe asthma

by Ailu Chen, Maria P. Diaz-Soto, Miguel F. Sanmamed, Taylor Adams, Jonas C. Schupp, Amolika Gupta, Clemente Britto, Maor Sauler, Xiting Yan, Qing Liu, Gustavo Nino, Charles S. Dela Cruz, Geoffrey L. Chupp, Jose L. Gomez
Published 2021-04-01

MicroRNA miR-24-3p reduces DNA damage responses, apoptosis, and susceptibility to chronic obstructive pulmonary disease

by Jessica Nouws, Feng Wan, Eric Finnemore, Willy Roque, So-Jin Kim, Isabel Bazan, Chuan-xing Li, C. Magnus Skold, Qile Dai, Xiting Yan, Maurizio Chioccioli, Veronique Neumeister, Clemente J. Britto, Joann Sweasy, Ranjit Bindra, Åsa M. Wheelock, Jose L. Gomez, Naftali Kaminski, Patty J. Lee, Maor Sauler
Published 2021-01-01

Genomic Comparison Among Global Isolates of L. interrogans Serovars Copenhageni and Icterohaemorrhagiae Identified Natural Genetic Variation Caused by an Indel

by Luciane A. Santos, Luciane A. Santos, Haritha Adhikarla, Xiting Yan, Zheng Wang, Derrick E. Fouts, Joseph M. Vinetz, Luiz C. J. Alcantara, Rudy A. Hartskeerl, Marga G. A. Goris, Mathieu Picardeau, Mitermayer G. Reis, Jeffrey P. Townsend, Hongyu Zhao, Albert I. Ko, Albert I. Ko, Elsio A. Wunder, Elsio A. Wunder
Published 2018-06-01