Partner-aware prediction of interacting residues in protein-protein complexes from sequence data.

by Shandar Ahmad, Kenji Mizuguchi
Published 2011-01-01

Prediction of detailed enzyme functions and identification of specificity determining residues by random forests.

by Chioko Nagao, Nozomi Nagano, Kenji Mizuguchi
Published 2014-01-01

Prediction of the secondary structure of short DNA aptamers

by Arina Afanasyeva, Chioko Nagao, Kenji Mizuguchi
Published 2019-11-01

Integrative Analysis Reveals Common and Unique Roles of Tetraspanins in Fibrosis and Emphysema

by Lokesh P. Tripathi, Lokesh P. Tripathi, Mari N. Itoh, Mari N. Itoh, Yoshito Takeda, Kazuyuki Tsujino, Yasushi Kondo, Atsushi Kumanogoh, Kenji Mizuguchi, Kenji Mizuguchi, Kenji Mizuguchi
Published 2020-12-01

TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery.

by Yi-An Chen, Lokesh P Tripathi, Kenji Mizuguchi
Published 2011-03-01

CLINE: a web-tool for the comparison of biological dendrogram structures

by Rodolfo S. Allendes Osorio, Lokesh P. Tripathi, Kenji Mizuguchi
Published 2019-10-01

Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks

by Attayeb Mohsen, Jonguk Park, Yi-An Chen, Hitoshi Kawashima, Kenji Mizuguchi
Published 2019-11-01

Ligand-induced Ordering of the C-terminal Tail Primes STING for Phosphorylation by TBK1

by Yuko Tsuchiya, Nao Jounai, Fumihiko Takeshita, Ken J. Ishii, Kenji Mizuguchi
Published 2016-07-01

Interactive Toxicogenomics: Gene set discovery, clustering and analysis in Toxygates

by Johan Nyström-Persson, Yayoi Natsume-Kitatani, Yoshinobu Igarashi, Daisuke Satoh, Kenji Mizuguchi
Published 2017-05-01

Assessing drug target suitability using TargetMine [version 2; peer review: 2 approved]

by Yi-An Chen, Erika Yogo, Naoko Kurihara, Tomoshige Ohno, Chihiro Higuchi, Masatomo Rokushima, Kenji Mizuguchi
Published 2019-05-01

Assessing drug target suitability using TargetMine [version 1; peer review: 2 approved]

by Yi-An Chen, Erika Yogo, Naoko Kurihara, Tomoshige Ohno, Chihiro Higuchi, Masatomo Rokushima, Kenji Mizuguchi
Published 2019-02-01

The TargetMine Data Warehouse: Enhancement and Updates

by Yi-An Chen, Lokesh P. Tripathi, Takeshi Fujiwara, Tatsuya Kameyama, Mari N. Itoh, Kenji Mizuguchi
Published 2019-10-01

Panomicon: A web-based environment for interactive, visual analysis of multi-omics data

by Rodolfo S. Allendes Osorio, Johan T. Nyström-Persson, Yosui Nojima, Yuji Kosugi, Kenji Mizuguchi, Yayoi Natsume-Kitatani
Published 2020-08-01

Integrated pathway clusters with coherent biological themes for target prioritisation.

by Yi-An Chen, Lokesh P Tripathi, Benoit H Dessailly, Johan Nyström-Persson, Shandar Ahmad, Kenji Mizuguchi
Published 2014-01-01

Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences

by Munazah Andrabi, Andrew Paul Hutchins, Diego Miranda-Saavedra, Hidetoshi Kono, Ruth Nussinov, Kenji Mizuguchi, Shandar Ahmad
Published 2017-06-01

Metabolomic analysis of fibrotic mice combined with public RNA‐Seq human lung data reveal potential diagnostic biomarker candidates for lung fibrosis

by Yosui Nojima, Yoshito Takeda, Yohei Maeda, Takeshi Bamba, Eiichiro Fukusaki, Mari N. Itoh, Kenji Mizuguchi, Atsushi Kumanogoh
Published 2020-11-01

Distinct Age-Specific miRegulome Profiling of Isolated Small and Large Intestinal Epithelial Cells in Mice

by Juneyoung Lee, Attayeb Mohsen, Anik Banerjee, Louise D. McCullough, Kenji Mizuguchi, Motomu Shimaoka, Hiroshi Kiyono, Eun Jeong Park
Published 2021-03-01

BIG3 Inhibits the Estrogen-Dependent Nuclear Translocation of PHB2 via Multiple Karyopherin-Alpha Proteins in Breast Cancer Cells.

by Nam-Hee Kim, Tetsuro Yoshimaru, Yi-An Chen, Taisuke Matsuo, Masato Komatsu, Yasuo Miyoshi, Eiji Tanaka, Mitsunori Sasa, Kenji Mizuguchi, Toyomasa Katagiri
Published 2015-01-01

Relationship between Nutrient Intake and Human Gut Microbiota in Monozygotic Twins

by Natsuko Matsumoto, Jonguk Park, Rie Tomizawa, Hitoshi Kawashima, Koji Hosomi, Kenji Mizuguchi, Chika Honda, Ritsuko Ozaki, Yoshinori Iwatani, Mikio Watanabe, Jun Kunisawa
Published 2021-03-01

Drosophila neurotrophins reveal a common mechanism for nervous system formation.

by Bangfu Zhu, Jenny A Pennack, Peter McQuilton, Manuel G Forero, Kenji Mizuguchi, Ben Sutcliffe, Chun-Jing Gu, Janine C Fenton, Alicia Hidalgo
Published 2008-11-01