Archaeal Ubiquitin-Like Proteins: Functional Versatility and Putative Ancestral Involvement in tRNA Modification Revealed by Comparative Genomic Analysis

by Kira S. Makarova, Eugene V. Koonin
Published 2010-01-01

The complex domain architecture of SAMD9 family proteins, predicted STAND-like NTPases, suggests new links to inflammation and apoptosis

by Sergei L. Mekhedov, Kira S. Makarova, Eugene V. Koonin
Published 2017-05-01

Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales

by Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin
Published 2015-03-01

Evolution of replicative DNA polymerases in archaea and their contributions to the eukaryotic replication machinery

by Kira S Makarova, Mart eKrupovic, Eugene V. Koonin
Published 2014-07-01

Identification of Dephospho-Coenzyme A (Dephospho-CoA) Kinase in Thermococcus kodakarensis and Elucidation of the Entire CoA Biosynthesis Pathway in Archaea

by Takahiro Shimosaka, Kira S. Makarova, Eugene V. Koonin, Haruyuki Atomi
Published 2019-07-01

A Unique Gene Module in Thermococcales Archaea Centered on a Hypervariable Protein Containing Immunoglobulin Domains

by Kira S. Makarova, Yuri I. Wolf, Svetlana Karamycheva, Eugene V. Koonin
Published 2021-08-01

DIVERSITY AND EVOLUTION OF TYPE IV PILI SYSTEMS IN ARCHAEA

by Kira eMakarova, Eugene V Koonin, Sonja-Verena eAlbers
Published 2016-05-01

Proposed Role for KaiC-Like ATPases as Major Signal Transduction Hubs in Archaea

by Kira S. Makarova, Michael Y. Galperin, Eugene V. Koonin, Igor B. Zhulin
Published 2017-12-01

Reconstruction of the evolution of microbial defense systems

by Pere Puigbò, Kira S. Makarova, David M. Kristensen, Yuri I. Wolf, Eugene V. Koonin
Published 2017-04-01

Antimicrobial Peptides, Polymorphic Toxins, and Self-Nonself Recognition Systems in Archaea: an Untapped Armory for Intermicrobial Conflicts

by Kira S. Makarova, Yuri I. Wolf, Svetlana Karamycheva, Dapeng Zhang, L. Aravind, Eugene V. Koonin
Published 2019-05-01

CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems

by Kira eMakarova, Vivek eAnantharaman, Nick eGrishin, Eugene V. Koonin, L eAravind
Published 2014-04-01

Evolution of plant δ1-pyrroline-5-carboxylate reductases from phylogenetic and structural perspectives

by Giuseppe eForlani, Kira eMakarova, Milosz eRuszkowski, Michele eBertazzini, Boguslaw eNocek
Published 2015-08-01

Phylogenomics of Cas4 family nucleases

by Sanjarbek Hudaiberdiev, Sergey Shmakov, Yuri I. Wolf, Michael P. Terns, Kira S. Makarova, Eugene V. Koonin
Published 2017-11-01

The CRISPR Spacer Space Is Dominated by Sequences from Species-Specific Mobilomes

by Sergey A. Shmakov, Vassilii Sitnik, Kira S. Makarova, Yuri I. Wolf, Konstantin V. Severinov, Eugene V. Koonin, Michael S. Gilmore
Published 2017-09-01

Engineering of CRISPR-Cas12b for human genome editing

by Jonathan Strecker, Sara Jones, Balwina Koopal, Jonathan Schmid-Burgk, Bernd Zetsche, Linyi Gao, Kira S. Makarova, Eugene V. Koonin, Feng Zhang
Published 2019-01-01

Novel bacteriophages containing a genome of another bacteriophage within their genomes.

by Maud M Swanson, Brian Reavy, Kira S Makarova, Peter J Cock, David W Hopkins, Lesley Torrance, Eugene V Koonin, Michael Taliansky
Published 2012-01-01

Proteomic Analysis of Methanonatronarchaeum thermophilum AMET1, a Representative of a Putative New Class of Euryarchaeota, “Methanonatronarchaeia”

by Manuel Ferrer, Dimitry Y. Sorokin, Yuri I. Wolf, Sergio Ciordia, María C. Mena, Rafael Bargiela, Eugene V. Koonin, Kira S. Makarova
Published 2018-01-01

Machine-learning approach expands the repertoire of anti-CRISPR protein families

by Ayal B. Gussow, Allyson E. Park, Adair L. Borges, Sergey A. Shmakov, Kira S. Makarova, Yuri I. Wolf, Joseph Bondy-Denomy, Eugene V. Koonin
Published 2020-07-01

‘ARMAN’ archaea depend on association with euryarchaeal host in culture and in situ

by Olga V. Golyshina, Stepan V. Toshchakov, Kira S. Makarova, Sergey N. Gavrilov, Aleksei A. Korzhenkov, Violetta La Cono, Erika Arcadi, Taras Y. Nechitaylo, Manuel Ferrer, Ilya V. Kublanov, Yuri I. Wolf, Michail M. Yakimov, Peter N. Golyshin
Published 2017-07-01

The complete genome sequence of Thermoproteus tenax: a physiologically versatile member of the Crenarchaeota.

by Bettina Siebers, Melanie Zaparty, Guenter Raddatz, Britta Tjaden, Sonja-Verena Albers, Steve D Bell, Fabian Blombach, Arnulf Kletzin, Nikos Kyrpides, Christa Lanz, André Plagens, Markus Rampp, Andrea Rosinus, Mathias von Jan, Kira S Makarova, Hans-Peter Klenk, Stephan C Schuster, Reinhard Hensel
Published 2011-01-01