COSMO: A dynamic programming algorithm for multicriteria codon optimization

by Akito Taneda, Kiyoshi Asai
Published 2020-01-01

RintC: fast and accuracy-aware decomposition of distributions of RNA secondary structures with extended logsumexp

by Hiroki Takizawa, Junichi Iwakiri, Kiyoshi Asai
Published 2020-05-01

CentroidAlign-Web: A Fast and Accurate Multiple Aligner for Long Non-Coding RNAs

by Michiaki Hamada, Haruka Yonemoto, Kiyoshi Asai
Published 2013-03-01

Generalized centroid estimators in bioinformatics.

by Michiaki Hamada, Hisanori Kiryu, Wataru Iwasaki, Kiyoshi Asai
Published 2011-02-01

Prediction of conserved precursors of miRNAs and their mature forms by integrating position-specific structural features.

by Goro Terai, Hiroaki Okida, Kiyoshi Asai, Toutai Mituyama
Published 2012-01-01

Finding protein-coding genes through human polymorphisms.

by Edward Wijaya, Martin C Frith, Paul Horton, Kiyoshi Asai
Published 2013-01-01

Capturing alternative secondary structures of RNA by decomposition of base-pairing probabilities

by Taichi Hagio, Shun Sakuraba, Junichi Iwakiri, Ryota Mori, Kiyoshi Asai
Published 2018-02-01

Hybrid De Novo Genome Assembly Using MiSeq and SOLiD Short Read Data.

by Tsutomu Ikegami, Toyohiro Inatsugi, Isao Kojima, Myco Umemura, Hiroko Hagiwara, Masayuki Machida, Kiyoshi Asai
Published 2015-01-01

MIDDAS-M: motif-independent de novo detection of secondary metabolite gene clusters through the integration of genome sequencing and transcriptome data.

by Myco Umemura, Hideaki Koike, Nozomi Nagano, Tomoko Ishii, Jin Kawano, Noriko Yamane, Ikuko Kozone, Katsuhisa Horimoto, Kazuo Shin-ya, Kiyoshi Asai, Jiujiang Yu, Joan W Bennett, Masayuki Machida
Published 2013-01-01