The spread of scientific information: insights from the web usage statistics in PLoS article-level metrics.

by Koon-Kiu Yan, Mark Gerstein
Published 2011-01-01

MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions.

by Koon-Kiu Yan, Shaoke Lou, Mark Gerstein
Published 2017-07-01

The corrected gene proximity map for analyzing the 3D genome organization using Hi-C data

by Cheng Ye, Alberto Paccanaro, Mark Gerstein, Koon-Kiu Yan
Published 2020-05-01

Improved reconstruction of in silico gene regulatory networks by integrating knockout and perturbation data.

by Kevin Y Yip, Roger P Alexander, Koon-Kiu Yan, Mark Gerstein
Published 2010-01-01

Network Approaches for Dissecting the Immune System

by Hao Shi, Koon-Kiu Yan, Liang Ding, Chenxi Qian, Hongbo Chi, Jiyang Yu
Published 2020-08-01

Analysis of combinatorial regulation: scaling of partnerships between regulators with the number of governed targets.

by Nitin Bhardwaj, Matthew B Carson, Alexej Abyzov, Koon-Kiu Yan, Hui Lu, Mark B Gerstein
Published 2010-05-01

Loregic: a method to characterize the cooperative logic of regulatory factors.

by Daifeng Wang, Koon-Kiu Yan, Cristina Sisu, Chao Cheng, Joel Rozowsky, William Meyerson, Mark B Gerstein
Published 2015-04-01

Measuring the evolutionary rewiring of biological networks.

by Chong Shou, Nitin Bhardwaj, Hugo Y K Lam, Koon-Kiu Yan, Philip M Kim, Michael Snyder, Mark B Gerstein
Published 2011-01-01

Cellular superspreaders: an epidemiological perspective on HIV infection inside the body.

by Kristina Talbert-Slagle, Katherine E Atkins, Koon-Kiu Yan, Ekta Khurana, Mark Gerstein, Elizabeth H Bradley, David Berg, Alison P Galvani, Jeffrey P Townsend
Published 2014-05-01

Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data.

by Chao Cheng, Koon-Kiu Yan, Woochang Hwang, Jiang Qian, Nitin Bhardwaj, Joel Rozowsky, Zhi John Lu, Wei Niu, Pedro Alves, Masaomi Kato, Michael Snyder, Mark Gerstein
Published 2011-11-01

Measuring the reproducibility and quality of Hi-C data

by Galip Gürkan Yardımcı, Hakan Ozadam, Michael E. G. Sauria, Oana Ursu, Koon-Kiu Yan, Tao Yang, Abhijit Chakraborty, Arya Kaul, Bryan R. Lajoie, Fan Song, Ye Zhan, Ferhat Ay, Mark Gerstein, Anshul Kundaje, Qunhua Li, James Taylor, Feng Yue, Job Dekker, William S. Noble
Published 2019-03-01

An integrative ENCODE resource for cancer genomics

by Jing Zhang, Donghoon Lee, Vineet Dhiman, Peng Jiang, Jie Xu, Patrick McGillivray, Hongbo Yang, Jason Liu, William Meyerson, Declan Clarke, Mengting Gu, Shantao Li, Shaoke Lou, Jinrui Xu, Lucas Lochovsky, Matthew Ung, Lijia Ma, Shan Yu, Qin Cao, Arif Harmanci, Koon-Kiu Yan, Anurag Sethi, Gamze Gürsoy, Michael Rutenberg Schoenberg, Joel Rozowsky, Jonathan Warrell, Prashant Emani, Yucheng T. Yang, Timur Galeev, Xiangmeng Kong, Shuang Liu, Xiaotong Li, Jayanth Krishnan, Yanlin Feng, Juan Carlos Rivera-Mulia, Jessica Adrian, James R Broach, Michael Bolt, Jennifer Moran, Dominic Fitzgerald, Vishnu Dileep, Tingting Liu, Shenglin Mei, Takayo Sasaki, Claudia Trevilla-Garcia, Su Wang, Yanli Wang, Chongzhi Zang, Daifeng Wang, Robert J. Klein, Michael Snyder, David M. Gilbert, Kevin Yip, Chao Cheng, Feng Yue, X. Shirley Liu, Kevin P. White, Mark Gerstein
Published 2020-07-01