Functional divergence and evolutionary turnover in mammalian phosphoproteomes.

by Luca Freschi, Mazid Osseni, Christian R Landry
Published 2014-01-01

Beyond multidrug resistance: Leveraging rare variants with machine and statistical learning models in Mycobacterium tuberculosis resistance predictionResearch in context

by Michael L. Chen, Akshith Doddi, Jimmy Royer, Luca Freschi, Marco Schito, Matthew Ezewudo, Isaac S. Kohane, Andrew Beam, Maha Farhat
Published 2019-05-01

GenTB: A user-friendly genome-based predictor for tuberculosis resistance powered by machine learning

by Matthias I. Gröschel, Martin Owens, Luca Freschi, Roger Vargas, Maximilian G. Marin, Jody Phelan, Zamin Iqbal, Avika Dixit, Maha R. Farhat
Published 2021-08-01

In-host population dynamics of Mycobacterium tuberculosis complex during active disease

by Roger Vargas, Luca Freschi, Maximillian Marin, L Elaine Epperson, Melissa Smith, Irina Oussenko, David Durbin, Michael Strong, Max Salfinger, Maha Reda Farhat
Published 2021-02-01

Prophage Integrase Typing Is a Useful Indicator of Genomic Diversity in Salmonella enterica

by Anna Colavecchio, Yasmin D’Souza, Elizabeth Tompkins, Julie Jeukens, Luca Freschi, Jean-Guillaume Emond-Rheault, Irena Kukavica-Ibrulj, Brian Boyle, Sadjia Bekal, Sandeep Tamber, Roger C. Levesque, Lawrence D. Goodridge
Published 2017-07-01

GWAS for quantitative resistance phenotypes in Mycobacterium tuberculosis reveals resistance genes and regulatory regions

by Maha R. Farhat, Luca Freschi, Roger Calderon, Thomas Ioerger, Matthew Snyder, Conor J. Meehan, Bouke de Jong, Leen Rigouts, Alex Sloutsky, Devinder Kaur, Shamil Sunyaev, Dick van Soolingen, Jay Shendure, Jim Sacchettini, Megan Murray
Published 2019-05-01

A Multi-Species TaqMan PCR Assay for the Identification of Asian Gypsy Moths (Lymantria spp.) and Other Invasive Lymantriines of Biosecurity Concern to North America.

by Donald Stewart, Reza Zahiri, Abdelmadjid Djoumad, Luca Freschi, Josyanne Lamarche, Dave Holden, Sandra Cervantes, Dario I Ojeda, Amélie Potvin, Audrey Nisole, Catherine Béliveau, Arnaud Capron, Troy Kimoto, Brittany Day, Hesther Yueh, Cameron Duff, Roger C Levesque, Richard C Hamelin, Michel Cusson
Published 2016-01-01

The <i>Salmonella enterica</i> Plasmidome as a Reservoir of Antibiotic Resistance

by Jean-Guillaume Emond-Rheault, Jérémie Hamel, Julie Jeukens, Luca Freschi, Irena Kukavica-Ibrulj, Brian Boyle, Sandeep Tamber, Danielle Malo, Eelco Franz, Elton Burnett, France Daigle, Gitanjali Arya, Kenneth Sanderson, Martin Wiedmann, Robin M. Slawson, Joel T. Weadge, Roger Stephan, Sadjia Bekal, Samantha Gruenheid, Lawrence D. Goodridge, Roger C. Levesque
Published 2020-07-01

Salmonella enterica Prophage Sequence Profiles Reflect Genome Diversity and Can Be Used for High Discrimination Subtyping

by Walid Mottawea, Walid Mottawea, Walid Mottawea, Marc-Olivier Duceppe, Andrée A. Dupras, Valentine Usongo, Julie Jeukens, Luca Freschi, Jean-Guillaume Emond-Rheault, Jeremie Hamel, Irena Kukavica-Ibrulj, Brian Boyle, Alexander Gill, Elton Burnett, Eelco Franz, Gitanjali Arya, Joel T. Weadge, Samantha Gruenheid, Martin Wiedmann, Hongsheng Huang, France Daigle, Sylvain Moineau, Sadjia Bekal, Roger C. Levesque, Lawrence D. Goodridge, Dele Ogunremi
Published 2018-05-01

A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis

by Jean-Guillaume Emond-Rheault, Julie Jeukens, Luca Freschi, Irena Kukavica-Ibrulj, Brian Boyle, Marie-Josée Dupont, Anna Colavecchio, Virginie Barrere, Brigitte Cadieux, Gitanjali Arya, Sadjia Bekal, Chrystal Berry, Elton Burnett, Camille Cavestri, Travis K. Chapin, Alanna Crouse, France Daigle, Michelle D. Danyluk, Pascal Delaquis, Ken Dewar, Ken Dewar, Florence Doualla-Bell, Ismail Fliss, Karen Fong, Eric Fournier, Eelco Franz, Rafael Garduno, Alexander Gill, Samantha Gruenheid, Linda Harris, Carol B. Huang, Hongsheng Huang, Roger Johnson, Yann Joly, Maud Kerhoas, Nguyet Kong, Gisèle Lapointe, Line Larivière, Stéphanie Loignon, Danielle Malo, Sylvain Moineau, Walid Mottawea, Walid Mottawea, Kakali Mukhopadhyay, Céline Nadon, John Nash, Ida Ngueng Feze, Dele Ogunremi, Ann Perets, Ana V. Pilar, Aleisha R. Reimer, James Robertson, John Rohde, Kenneth E. Sanderson, Lingqiao Song, Roger Stephan, Sandeep Tamber, Paul Thomassin, Denise Tremblay, Valentine Usongo, Caroline Vincent, Siyun Wang, Joel T. Weadge, Martin Wiedmann, Lucas Wijnands, Emily D. Wilson, Thomas Wittum, Catherine Yoshida, Khadija Youfsi, Lei Zhu, Bart C. Weimer, Lawrence Goodridge, Roger C. Levesque
Published 2017-06-01