Interactions Between Clostridioides difficile and Fecal Microbiota in in Vitro Batch Model: Growth, Sporulation, and Microbiota Changes

by Sabina Horvat, Maja Rupnik, Maja Rupnik
Published 2018-07-01

Development and Implementation of Whole Genome Sequencing-Based Typing Schemes for Clostridioides difficile

by Sandra Janezic, Sandra Janezic, Maja Rupnik, Maja Rupnik
Published 2019-10-01

Different host factors are associated with patterns in bacterial and fungal gut microbiota in Slovenian healthy cohort.

by Aleksander Mahnic, Maja Rupnik
Published 2018-01-01

Comparison Between Cultivation and Sequencing Based Approaches for Microbiota Analysis in Swabs and Biopsies of Chronic Wounds

by Aleksander Mahnic, Vesna Breznik, Maja Bombek Ihan, Maja Rupnik, Maja Rupnik
Published 2021-06-01

Low overlap between carbapenem resistant Pseudomonas aeruginosa genotypes isolated from hospitalized patients and wastewater treatment plants.

by Andrej Golle, Sandra Janezic, Maja Rupnik
Published 2017-01-01

Novel <i>Siphoviridae </i>Bacteriophages Infecting <i>Bacteroides uniformis</i> Contain Diversity Generating Retroelement

by Stina Hedžet, Maja Rupnik, Tomaž Accetto
Published 2021-04-01

Corrigendum: Evaluation of Human Milk Microbiota by 16S rRNA Gene Next-Generation Sequencing (NGS) and Cultivation/MALDI-TOF Mass Spectrometry Identification

by Primož Treven, Aleksander Mahnič, Maja Rupnik, Maja Rupnik, Majda Golob, Tina Pirš, Bojana Bogovič Matijašić, Petra Mohar Lorbeg
Published 2020-01-01

Evaluation of Human Milk Microbiota by 16S rRNA Gene Next-Generation Sequencing (NGS) and Cultivation/MALDI-TOF Mass Spectrometry Identification

by Primož Treven, Aleksander Mahnič, Maja Rupnik, Maja Rupnik, Majda Golob, Tina Pirš, Bojana Bogovič Matijašić, Petra Mohar Lorbeg
Published 2019-11-01

Highly Divergent Clostridium difficile Strains Isolated from the Environment.

by Sandra Janezic, Mojca Potocnik, Valerija Zidaric, Maja Rupnik
Published 2016-01-01

Whole Genome Sequencing and Comparative Genomics of Two Nematicidal Bacillus Strains Reveals a Wide Range of Possible Virulence Factors

by Nik Susič, Sandra Janežič, Maja Rupnik, Barbara Gerič Stare
Published 2020-03-01

Ribotype Classification of Clostridioides difficile Isolates Is Not Predictive of the Amino Acid Sequence Diversity of the Toxin Virulence Factors TcdA and TcdB

by Zhenghui Li, Kwok Lee, Urvi Rajyaguru, C. Hal Jones, Sandra Janezic, Sandra Janezic, Maja Rupnik, Maja Rupnik, Annaliesa S. Anderson, Paul Liberator
Published 2020-06-01

Distinct Types of Gut Microbiota Dysbiosis in Hospitalized Gastroenterological Patients Are Disease Non-related and Characterized With the Predominance of Either Enterobacteriaceae...

by Aleksander Mahnic, Martin Breskvar, Martin Breskvar, Saso Dzeroski, Saso Dzeroski, Saso Dzeroski, Pavel Skok, Pavel Skok, Spela Pintar, Maja Rupnik, Maja Rupnik
Published 2020-02-01

Evaluating the effect of Clostridium difficile conditioned medium on fecal microbiota community structure

by Sabina Horvat, Aleksander Mahnic, Martin Breskvar, Saso Dzeroski, Maja Rupnik
Published 2017-11-01

Recombination drives evolution of the Clostridium difficile 16S-23S rRNA intergenic spacer region.

by Sandra Janezic, Alexander Indra, Thomas Rattei, Thomas Weinmaier, Maja Rupnik
Published 2014-01-01

The SOS Response Master Regulator LexA Is Associated with Sporulation, Motility and Biofilm Formation in Clostridium difficile.

by Beata M Walter, Stephen T Cartman, Nigel P Minton, Matej Butala, Maja Rupnik
Published 2015-01-01

Gut microbiota patterns associated with colonization of different Clostridium difficile ribotypes.

by Jure Skraban, Saso Dzeroski, Bernard Zenko, Domen Mongus, Simon Gangl, Maja Rupnik
Published 2013-01-01

DIVERSITY OF spa TYPES AMONG MRSA ISOLATES FROM MARIBOR UNIVERSITY HOSPITAL

by Božena Kotnik Kevorkijan, Marina Klasinc, Slavica Lorenčič Robnik, Živa Petrovič, Maja Rupnik
Published 2009-03-01

Clostridium difficile ribotypes in humans and animals in Brazil

by Rodrigo Otávio Silveira Silva, Maja Rupnik, Amanda Nádia Diniz, Eduardo Garcia Vilela, Francisco Carlos Faria Lobato
Published 2015-12-01

Sequence similarity of Clostridium difficile strains by analysis of conserved genes and genome content is reflected by their ribotype affiliation.

by Hedwig Kurka, Armin Ehrenreich, Wolfgang Ludwig, Marc Monot, Maja Rupnik, Frederic Barbut, Alexander Indra, Bruno Dupuy, Wolfgang Liebl
Published 2014-01-01

Proteotyping of Clostridioides difficile as Alternate Typing Method to Ribotyping Is Able to Distinguish the Ribotypes RT027 and RT176 From Other Ribotypes

by Matthias F. Emele, Felix M. Joppe, Thomas Riedel, Thomas Riedel, Jörg Overmann, Jörg Overmann, Maja Rupnik, Maja Rupnik, Paul Cooper, R. Lia Kusumawati, Fabian K. Berger, Friederike Laukien, Ortrud Zimmermann, Wolfgang Bohne, Uwe Groß, Oliver Bader, Andreas E. Zautner
Published 2019-09-01