Evaluation of algorithm performance in ChIP-seq peak detection.

by Elizabeth G Wilbanks, Marc T Facciotti
Published 2010-07-01

Regulatory Multidimensionality of Gas Vesicle Biogenesis in Halobacterium salinarum NRC-1

by Andrew I. Yao, Marc T. Facciotti
Published 2011-01-01

Schiff base switch II precedes the retinal thermal isomerization in the photocycle of bacteriorhodopsin.

by Ting Wang, Marc T Facciotti, Yong Duan
Published 2013-01-01

The Exploration of Novel Regulatory Relationships Drives Haloarchaeal Operon-Like Structural Dynamics over Short Evolutionary Distances

by Phillip Seitzer, Andrew I. Yao, Ariana Cisneros, Marc T. Facciotti
Published 2020-11-01

An integrated pipeline for de novo assembly of microbial genomes.

by Andrew Tritt, Jonathan A Eisen, Marc T Facciotti, Aaron E Darling
Published 2012-01-01

Conserved substitution patterns around nucleosome footprints in eukaryotes and Archaea derive from frequent nucleosome repositioning through evolution.

by Tobias Warnecke, Erin A Becker, Marc T Facciotti, Corey Nislow, Ben Lehner
Published 2013-01-01

Gene Gangs of the Chloroviruses: Conserved Clusters of Collinear Monocistronic Genes

by Phillip Seitzer, Adrien Jeanniard, Fangrui Ma, James L. Van Etten, Marc T. Facciotti, David D. Dunigan
Published 2018-10-01

Draft genome sequence of Halorubrum tropicale strain V5, a novel halophilic archaeon isolated from the solar salterns of Cabo Rojo, Puerto Rico

by Rubén Sánchez-Nieves, Marc T. Facciotti, Sofía Saavedra-Collado, Lizbeth Dávila-Santiago, Roy Rodríguez-Carrero, Rafael Montalvo-Rodríguez
Published 2016-03-01

Combining Microbial Culturing With Mathematical Modeling in an Introductory Course-Based Undergraduate Research Experience

by Robert E. Furrow, Hyunsoo G. Kim, Hyunsoo G. Kim, Samah M. R. Abdelrazek, Katherine Dahlhausen, Andrew I. Yao, Andrew I. Yao, Jonathan A. Eisen, Jonathan A. Eisen, Jonathan A. Eisen, Mark S. Goldman, Mark S. Goldman, John G. Albeck, Marc T. Facciotti, Marc T. Facciotti
Published 2020-11-01

A Large and Phylogenetically Diverse Class of Type 1 Opsins Lacking a Canonical Retinal Binding Site.

by Erin A Becker, Andrew I Yao, Phillip M Seitzer, Tobias Kind, Ting Wang, Rich Eigenheer, Katie S Y Shao, Vladimir Yarov-Yarovoy, Marc T Facciotti
Published 2016-01-01

Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response.

by Erin A Becker, Phillip M Seitzer, Andrew Tritt, David Larsen, Megan Krusor, Andrew I Yao, Dongying Wu, Dominique Madern, Jonathan A Eisen, Aaron E Darling, Marc T Facciotti
Published 2014-11-01

Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux.

by Erin A Lynch, Morgan G I Langille, Aaron Darling, Elizabeth G Wilbanks, Caitlin Haltiner, Katie S Y Shao, Michael O Starr, Clotilde Teiling, Timothy T Harkins, Robert A Edwards, Jonathan A Eisen, Marc T Facciotti
Published 2012-01-01

Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant.

by Tomas Persson, Kai Battenberg, Irina V Demina, Theoden Vigil-Stenman, Brian Vanden Heuvel, Petar Pujic, Marc T Facciotti, Elizabeth G Wilbanks, Anna O'Brien, Pascale Fournier, Maria Antonia Cruz Hernandez, Alberto Mendoza Herrera, Claudine Médigue, Philippe Normand, Katharina Pawlowski, Alison M Berry
Published 2015-01-01