CBA: Cluster-Guided Batch Alignment for Single Cell RNA-seq

by Wenbo Yu, Wenbo Yu, Ahmed Mahfouz, Ahmed Mahfouz, Ahmed Mahfouz, Marcel J. T. Reinders, Marcel J. T. Reinders, Marcel J. T. Reinders
Published 2021-04-01

2D Representation of Transcriptomes by t-SNE Exposes Relatedness between Human Tissues.

by Erdogan Taskesen, Marcel J T Reinders
Published 2016-01-01

Hierarchical progressive learning of cell identities in single-cell data

by Lieke Michielsen, Marcel J. T. Reinders, Ahmed Mahfouz
Published 2021-05-01

Transcriptomic Signatures Associated With Regional Cortical Thickness Changes in Parkinson’s Disease

by Arlin Keo, Arlin Keo, Oleh Dzyubachyk, Jeroen van der Grond, Jacobus J. van Hilten, Marcel J. T. Reinders, Marcel J. T. Reinders, Marcel J. T. Reinders, Ahmed Mahfouz, Ahmed Mahfouz, Ahmed Mahfouz
Published 2021-10-01

Automatic Gene Function Prediction in the 2020’s

by Stavros Makrodimitris, Roeland C. H. J. van Ham, Marcel J. T. Reinders
Published 2020-10-01

Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data.

by Alexey A Gritsenko, Marc Hulsman, Marcel J T Reinders, Dick de Ridder
Published 2015-08-01

How Metabolic State May Regulate Fear: Presence of Metabolic Receptors in the Fear Circuitry

by Lisa L. Koorneef, Lisa L. Koorneef, Marit Bogaards, Marit Bogaards, Marcel J. T. Reinders, Marcel J. T. Reinders, Onno C. Meijer, Onno C. Meijer, Onno C. Meijer, Ahmed Mahfouz, Ahmed Mahfouz
Published 2018-08-01

Understanding regulation of metabolism through feasibility analysis.

by Emrah Nikerel, Jan Berkhout, Fengyuan Hu, Bas Teusink, Marcel J T Reinders, Dick de Ridder
Published 2012-01-01

Module-based outcome prediction using breast cancer compendia.

by Martin H van Vliet, Christiaan N Klijn, Lodewyk F A Wessels, Marcel J T Reinders
Published 2007-01-01

An evaluation protocol for subtype-specific breast cancer event prediction.

by Herman M J Sontrop, Wim F J Verhaegh, Marcel J T Reinders, Perry D Moerland
Published 2011-01-01

RUBIC identifies driver genes by detecting recurrent DNA copy number breaks

by Ewald van Dyk, Marlous Hoogstraat, Jelle ten Hoeve, Marcel J. T. Reinders, Lodewyk F. A. Wessels
Published 2016-07-01

A comparison of automatic cell identification methods for single-cell RNA sequencing data

by Tamim Abdelaal, Lieke Michielsen, Davy Cats, Dylan Hoogduin, Hailiang Mei, Marcel J. T. Reinders, Ahmed Mahfouz
Published 2019-09-01

Insight into neutral and disease-associated human genetic variants through interpretable predictors.

by Bastiaan A van den Berg, Marcel J T Reinders, Dick de Ridder, Tjaart A P de Beer
Published 2015-01-01

Transcription factors of Schizophyllum commune involved in mushroom formation and modulation of vegetative growth

by Jordi F. Pelkmans, Mohini B. Patil, Thies Gehrmann, Marcel J. T. Reinders, Han A. B. Wösten, Luis G. Lugones
Published 2017-03-01

Co-expression Patterns between ATN1 and ATXN2 Coincide with Brain Regions Affected in Huntington’s Disease

by Arlin Keo, Arlin Keo, N. Ahmad Aziz, Oleh Dzyubachyk, Jeroen van der Grond, Willeke M. C. van Roon-Mom, Boudewijn P. F. Lelieveldt, Boudewijn P. F. Lelieveldt, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Marcel J. T. Reinders, Ahmed Mahfouz, Ahmed Mahfouz
Published 2017-11-01

Integration of clinical and gene expression data has a synergetic effect on predicting breast cancer outcome.

by Martin H van Vliet, Hugo M Horlings, Marc J van de Vijver, Marcel J T Reinders, Lodewyk F A Wessels
Published 2012-01-01

A structural equation model for imaging genetics using spatial transcriptomics

by Sjoerd M. H. Huisman, Ahmed Mahfouz, Nematollah K. Batmanghelich, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, for the Alzheimer’s Disease Neuroimaging Initiative
Published 2018-11-01

Exploring sequence characteristics related to high-level production of secreted proteins in Aspergillus niger.

by Bastiaan A van den Berg, Marcel J T Reinders, Marc Hulsman, Liang Wu, Herman J Pel, Johannes A Roubos, Dick de Ridder
Published 2012-01-01

Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types

by Vincent van Unen, Thomas Höllt, Nicola Pezzotti, Na Li, Marcel J. T. Reinders, Elmar Eisemann, Frits Koning, Anna Vilanova, Boudewijn P. F. Lelieveldt
Published 2017-11-01

A survey of functional genomic variation in domesticated chickens

by Martijn F. L. Derks, Hendrik-Jan Megens, Mirte Bosse, Jeroen Visscher, Katrijn Peeters, Marco C. A. M. Bink, Addie Vereijken, Christian Gross, Dick de Ridder, Marcel J. T. Reinders, Martien A. M. Groenen
Published 2018-04-01