Techniques for Studying Decoding of Single Cell Dynamics

by Stevan Jeknić, Stevan Jeknić, Takamasa Kudo, Takamasa Kudo, Markus W. Covert, Markus W. Covert, Markus W. Covert
Published 2019-04-01

A Protocol to Engineer Bacteriophages for Live-Cell Imaging of Bacterial Prophage Induction Inside Mammalian Cells

by Katie Bodner, Arin L. Melkonian, Markus W. Covert
Published 2020-09-01

Combining Comprehensive Analysis of Off-Site Lambda Phage Integration with a CRISPR-Based Means of Characterizing Downstream Physiology

by Yu Tanouchi, Markus W. Covert, Sang Yup Lee
Published 2017-09-01

Determining host metabolic limitations on viral replication via integrated modeling and experimental perturbation.

by Elsa W Birch, Nicholas A Ruggero, Markus W Covert
Published 2012-01-01

Single-cell and population NF-κB dynamic responses depend on lipopolysaccharide preparation.

by Miriam V Gutschow, Jacob J Hughey, Nicholas A Ruggero, Bryce T Bajar, Sean D Valle, Markus W Covert
Published 2013-01-01

A forward-genetic screen and dynamic analysis of lambda phage host-dependencies reveals an extensive interaction network and a new anti-viral strategy.

by Nathaniel D Maynard, Elsa W Birch, Jayodita C Sanghvi, Lu Chen, Miriam V Gutschow, Markus W Covert
Published 2010-07-01

Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments.

by David A Van Valen, Takamasa Kudo, Keara M Lane, Derek N Macklin, Nicolas T Quach, Mialy M DeFelice, Inbal Maayan, Yu Tanouchi, Euan A Ashley, Markus W Covert
Published 2016-11-01

High-resolution imaging and computational analysis of haematopoietic cell dynamics in vivo

by Claire S. Koechlein, Jeffrey R. Harris, Timothy K. Lee, Joi Weeks, Raymond G. Fox, Bryan Zimdahl, Takahiro Ito, Allen Blevins, Seung-Hye Jung, John P. Chute, Amit Chourasia, Markus W. Covert, Tannishtha Reya
Published 2016-07-01

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models.

by Jonathan R Karr, Alex H Williams, Jeremy D Zucker, Andreas Raue, Bernhard Steiert, Jens Timmer, Clemens Kreutz, DREAM8 Parameter Estimation Challenge Consortium, Simon Wilkinson, Brandon A Allgood, Brian M Bot, Bruce R Hoff, Michael R Kellen, Markus W Covert, Gustavo A Stolovitzky, Pablo Meyer
Published 2015-05-01