On the effect of phylogenetic correlations in coevolution-based contact prediction in proteins.

by Edwin Rodriguez Horta, Martin Weigt
Published 2021-05-01

From principal component to direct coupling analysis of coevolution in proteins: low-eigenvalue modes are needed for structure prediction.

by Simona Cocco, Remi Monasson, Martin Weigt
Published 2013-01-01

Phylogenetic correlations can suffice to infer protein partners from sequences.

by Guillaume Marmier, Martin Weigt, Anne-Florence Bitbol
Published 2019-10-01

FilterDCA: Interpretable supervised contact prediction using inter-domain coevolution.

by Maureen Muscat, Giancarlo Croce, Edoardo Sarti, Martin Weigt
Published 2020-10-01

Toward Inferring Potts Models for Phylogenetically Correlated Sequence Data

by Edwin Rodriguez Horta, Pierre Barrat-Charlaix, Martin Weigt
Published 2019-11-01

Inter-Protein Sequence Co-Evolution Predicts Known Physical Interactions in Bacterial Ribosomes and the Trp Operon.

by Christoph Feinauer, Hendrik Szurmant, Martin Weigt, Andrea Pagnani
Published 2016-01-01

Dissecting the specificity of protein-protein interaction in bacterial two-component signaling: orphans and crosstalks.

by Andrea Procaccini, Bryan Lunt, Hendrik Szurmant, Terence Hwa, Martin Weigt
Published 2011-05-01

Efficient generative modeling of protein sequences using simple autoregressive models

by Jeanne Trinquier, Guido Uguzzoni, Andrea Pagnani, Francesco Zamponi, Martin Weigt
Published 2021-10-01

Fast and accurate multivariate Gaussian modeling of protein families: predicting residue contacts and protein-interaction partners.

by Carlo Baldassi, Marco Zamparo, Christoph Feinauer, Andrea Procaccini, Riccardo Zecchina, Martin Weigt, Andrea Pagnani
Published 2014-01-01

A multi-scale coevolutionary approach to predict interactions between protein domains.

by Giancarlo Croce, Thomas Gueudré, Maria Virginia Ruiz Cuevas, Victoria Keidel, Matteo Figliuzzi, Hendrik Szurmant, Martin Weigt
Published 2019-10-01

The evolution of the temporal program of genome replication

by Nicolas Agier, Stéphane Delmas, Qing Zhang, Aubin Fleiss, Yan Jaszczyszyn, Erwin van Dijk, Claude Thermes, Martin Weigt, Marco Cosentino-Lagomarsino, Gilles Fischer
Published 2018-06-01

Perturbation biology: inferring signaling networks in cellular systems.

by Evan J Molinelli, Anil Korkut, Weiqing Wang, Martin L Miller, Nicholas P Gauthier, Xiaohong Jing, Poorvi Kaushik, Qin He, Gordon Mills, David B Solit, Christine A Pratilas, Martin Weigt, Alfredo Braunstein, Andrea Pagnani, Riccardo Zecchina, Chris Sander
Published 2013-01-01

Meet-U: Educating through research immersion.

by Nika Abdollahi, Alexandre Albani, Eric Anthony, Agnes Baud, Mélissa Cardon, Robert Clerc, Dariusz Czernecki, Romain Conte, Laurent David, Agathe Delaune, Samia Djerroud, Pauline Fourgoux, Nadège Guiglielmoni, Jeanne Laurentie, Nathalie Lehmann, Camille Lochard, Rémi Montagne, Vasiliki Myrodia, Vaitea Opuu, Elise Parey, Lélia Polit, Sylvain Privé, Chloé Quignot, Maria Ruiz-Cuevas, Mariam Sissoko, Nicolas Sompairac, Audrey Vallerix, Violaine Verrecchia, Marc Delarue, Raphael Guérois, Yann Ponty, Sophie Sacquin-Mora, Alessandra Carbone, Christine Froidevaux, Stéphane Le Crom, Olivier Lespinet, Martin Weigt, Samer Abboud, Juliana Bernardes, Guillaume Bouvier, Chloé Dequeker, Arnaud Ferré, Patrick Fuchs, Gaëlle Lelandais, Pierre Poulain, Hugues Richard, Hugo Schweke, Elodie Laine, Anne Lopes
Published 2018-03-01