bin3C: exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes

by Matthew Z. DeMaere, Aaron E. Darling
Published 2019-02-01

Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms applied to metagenomic chromosome conformation capture (3C)

by Matthew Z. DeMaere, Aaron E. Darling
Published 2016-11-01

High contiguity genome sequence of a multidrug-resistant hospital isolate of Enterobacter hormaechei

by Leigh G. Monahan, Matthew Z. DeMaere, Max L. Cummins, Steven P. Djordjevic, Piklu Roy Chowdhury, Aaron E. Darling
Published 2019-02-01

Evaluation of ddRADseq for reduced representation metagenome sequencing

by Michael Y. Liu, Paul Worden, Leigh G. Monahan, Matthew Z. DeMaere, Catherine M. Burke, Steven P. Djordjevic, Ian G. Charles, Aaron E. Darling
Published 2017-09-01

Complete Sequences of Multiple-Drug Resistant IncHI2 ST3 Plasmids in Escherichia coli of Porcine Origin in Australia

by Ethan R. Wyrsch, Cameron J. Reid, Matthew Z. DeMaere, Michael Y. Liu, Toni A. Chapman, Piklu Roy Chowdhury, Piklu Roy Chowdhury, Steven P. Djordjevic
Published 2019-03-01

Genomic variation and biogeography of Antarctic haloarchaea

by Bernhard Tschitschko, Susanne Erdmann, Matthew Z. DeMaere, Simon Roux, Pratibha Panwar, Michelle A. Allen, Timothy J. Williams, Sarah Brazendale, Alyce M. Hancock, Emiley A. Eloe-Fadrosh, Ricardo Cavicchioli
Published 2018-06-01

CAMISIM: simulating metagenomes and microbial communities

by Adrian Fritz, Peter Hofmann, Stephan Majda, Eik Dahms, Johannes Dröge, Jessika Fiedler, Till R. Lesker, Peter Belmann, Matthew Z. DeMaere, Aaron E. Darling, Alexander Sczyrba, Andreas Bremges, Alice C. McHardy
Published 2019-02-01