The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

by McKenna, Aaron, Hanna, Matthew, Sivachenko, Andrey, Cibulskis, Kristian, Kernytsky, Andrew, Garimella, Kiran, Altshuler, David, Gabriel, Stacey B., Daly, Mark J., DePristo, Mark A., Banks, Eric 1976-
Published 2014

Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data

by Köksal, Ali Sinan, Beck, Kirsten, Cronin, Dylan R., Camp, Nathan D., MacGilvray, Matthew E., Bodík, Rastislav, Fisher, Jasmin, McKenna, Aaron, Srivastava, Saurabh, Wolf Yadlin, Alejandro Marcelo, Fraenkel, Ernest, Gitter, Anthony
Published 2018

Genetic and Clonal Dissection of Murine Small Cell Lung Carcinoma Progression by Genome Sequencing

by Taylor-Weiner, Amaro, Stewart, Chip, Carter, Scott L, Cibulskis, Kristian, McKenna, Aaron, Dooley, Alison, Sougnez, Carrie, Park, Jennifer, Farago, Anna F, Dayton, Talya, Shefler, Erica, Gabriel, Stacey, Getz, Gad, McFadden, David Glenn, Papagiannakopoulos, Thales, Bhutkar, Arjun, Vernon, Amanda, Malstrom, Scott E., Heimann, Megan Kristianne, Parker, Jennifer E., Chen, Frances K., Jacks, Tyler E.
Published 2017

Paired exome analysis of Barrett's esophagus and adenocarcinoma

by Stachler, Matthew D, Taylor-Weiner, Amaro, Peng, Shouyong, McKenna, Aaron, Agoston, Agoston T, Odze, Robert D, Davison, Jon M, Nason, Katie S, Loda, Massimo, Leshchiner, Ignaty, Stewart, Chip, Stojanov, Petar, Seepo, Sara, Lawrence, Michael S, Ferrer-Torres, Daysha, Lin, Jules, Chang, Andrew C, Gabriel, Stacey B, Beer, David G, Getz, Gad, Carter, Scott L, Bass, Adam J, Lander, Eric Steven
Published 2017

Paired exome analysis of Barrett's esophagus and adenocarcinoma

by Stachler, Matthew D, Taylor-Weiner, Amaro, Peng, Shouyong, McKenna, Aaron, Agoston, Agoston T, Odze, Robert D, Davison, Jon M, Nason, Katie S, Loda, Massimo, Leshchiner, Ignaty, Stewart, Chip, Stojanov, Petar, Seepo, Sara, Lawrence, Michael S, Ferrer-Torres, Daysha, Lin, Jules, Chang, Andrew C, Gabriel, Stacey B, Beer, David G, Getz, Gad, Carter, Scott L, Bass, Adam J, Lander, Eric Steven
Published 2016

Evolution and Impact of Subclonal Mutations in Chronic Lymphocytic Leukemia

by Landau, Dan A, Carter, Scott L., Stojanov, Petar, McKenna, Aaron, Stevenson, Kristen, Lawrence, Michael S., Sougnez, Carrie, Stewart, Chip, Sivachenko, Andrey, Wang, Lili, Wan, Youzhong, Zhang, Wandi, Shukla, Sachet A, Vartanov, Alexander, Fernandes, Stacey M., Saksena, Gordon, Cibulskis, Kristian, Tesar, Bethany, Gabriel, Stacey B., Hacohen, Nir, Meyerson, Matthew L., Neuberg, Donna S., Brown, Jennifer R., Getz, Gad, Wu, Catherine J, Lander, Eric Steven
Published 2014