Challenging a bioinformatic tool’s ability to detect microbial contaminants using in silico whole genome sequencing data

by Nathan D. Olson, Justin M. Zook, Jayne B. Morrow, Nancy J. Lin
Published 2017-09-01

The genotype‐phenotype landscape of an allosteric protein

by Drew S Tack, Peter D Tonner, Abe Pressman, Nathan D Olson, Sasha F Levy, Eugenia F Romantseva, Nina Alperovich, Olga Vasilyeva, David Ross
Published 2021-03-01

A framework for assessing 16S rRNA marker-gene survey data analysis methods using mixtures.

by Nathan D. Olson, M. Senthil Kumar, Shan Li, Domenick J. Braccia, Stephanie Hao, Winston Timp, Marc L. Salit, O. Colin Stine, Hector Corrada Bravo
Published 2020-03-01

Zero-Valent Iron Sand Filtration Can Reduce Human and Plant Pathogenic Bacteria While Increasing Plant Growth Promoting Bacteria in Reclaimed Water

by Prachi Kulkarni, Nathan D. Olson, Nathan D. Olson, Anthony Q. Bui, Rhodel N. Bradshaw, Laura P. Del Collo, Lauren E. Hittle, Eric T. Handy, Joseph N. Paulson, Jay Ghurye, Daniel J. Nasko, Cheryl East, Jo Ann Van Kessel, Kalmia E. Kniel, Pei C. Chiu, Emmanuel F. Mongodin, Mihai Pop, Manan Sharma, Amy R. Sapkota
Published 2020-11-01

Assembly and annotation of an Ashkenazi human reference genome

by Alaina Shumate, Aleksey V. Zimin, Rachel M. Sherman, Daniela Puiu, Justin M. Wagner, Nathan D. Olson, Mihaela Pertea, Marc L. Salit, Justin M. Zook, Steven L. Salzberg
Published 2020-06-01

International interlaboratory study comparing single organism 16S rRNA gene sequencing data: Beyond consensus sequence comparisons

by Nathan D. Olson, Steven P. Lund, Justin M. Zook, Fabiola Rojas-Cornejo, Brian Beck, Carole Foy, Jim Huggett, Alexandra S. Whale, Zhiwei Sui, Anna Baoutina, Michael Dobeson, Lina Partis, Jayne B. Morrow
Published 2015-03-01

Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College P...

by Jacquelyn S. Meisel, Daniel J. Nasko, Brian Brubach, Victoria Cepeda-Espinoza, Jessica Chopyk, Héctor Corrada-Bravo, Marcus Fedarko, Jay Ghurye, Kiran Javkar, Nathan D. Olson, Nidhi Shah, Sarah M. Allard, Adam L. Bazinet, Nicholas H. Bergman, Alexis Brown, J. Gregory Caporaso, Sean Conlan, Jocelyne DiRuggiero, Samuel P. Forry, Nur A. Hasan, Jason Kralj, Paul M. Luethy, Donald K. Milton, Brian D. Ondov, Sarah Preheim, Shashikala Ratnayake, Stephanie M. Rogers, M. J. Rosovitz, Eric G. Sakowski, Nils Oliver Schliebs, Daniel D. Sommer, Krista L. Ternus, Gherman Uritskiy, Sean X. Zhang, Mihai Pop, Todd J. Treangen
Published 2018-11-01