Bayesian reconstruction of transmission within outbreaks using genomic variants.

by Nicola De Maio, Colin J Worby, Daniel J Wilson, Nicole Stoesser
Published 2018-04-01

Transmission Dynamics of Hyper-Endemic Multi-Drug Resistant Klebsiella pneumoniae in a Southeast Asian Neonatal Unit: A Longitudinal Study With Whole Genome Sequencing

by Pieter W. Smit, Pieter W. Smit, Nicole Stoesser, Nicole Stoesser, Sreymom Pol, Esther van Kleef, Esther van Kleef, Mathupanee Oonsivilai, Pisey Tan, Leakhena Neou, Claudia Turner, Claudia Turner, Paul Turner, Paul Turner, Ben S. Cooper, Ben S. Cooper
Published 2018-06-01

Pathogenicity of mcr-1-positive Escherichia coli from human infections

by Cong Shen, Lan-Lan Zhong, Yohei Doi, Nicole Stoesser, Furong Ma, Zihan Zhao, Bin Yan, Guo-Bao Tian
Published 2020-09-01

Viral detection and identification in 20 min by rapid single-particle fluorescence in-situ hybridization of viral RNA

by Christof Hepp, Nicolas Shiaelis, Nicole C. Robb, Alison Vaughan, Philippa C. Matthews, Nicole Stoesser, Derrick Crook, Achillefs N. Kapanidis
Published 2021-10-01

Transmission dynamics and control of multidrug-resistant Klebsiella pneumoniae in neonates in a developing country

by Thomas Crellen, Paul Turner, Sreymom Pol, Stephen Baker, To Nguyen Thi Nguyen, Nicole Stoesser, Nicholas PJ Day, Claudia Turner, Ben S Cooper
Published 2019-12-01

A curated dataset of complete Enterobacteriaceae plasmids compiled from the NCBI nucleotide database

by Alex Orlek, Hang Phan, Anna E. Sheppard, Michel Doumith, Matthew Ellington, Tim Peto, Derrick Crook, A. Sarah Walker, Neil Woodford, Muna F. Anjum, Nicole Stoesser
Published 2017-06-01

Characterisation of Invasive Streptococcus pneumoniae Isolated from Cambodian Children between 2007 - 2012.

by Catrin E Moore, Adam Giess, Sona Soeng, Poda Sar, Varun Kumar, Pheakdey Nhoung, Rachel Bousfield, Paul Turner, Nicole Stoesser, Nicholas P J Day, Christopher M Parry
Published 2016-01-01

Supporting surveillance capacity for antimicrobial resistance: Laboratory capacity strengthening for drug resistant infections in low and middle income countries [version 1; refere...

by Anna C. Seale, Coll Hutchison, Silke Fernandes, Nicole Stoesser, Helen Kelly, Brett Lowe, Paul Turner, Kara Hanson, Clare I.R. Chandler, Catherine Goodman, Richard A. Stabler, J. Anthony G. Scott
Published 2017-09-01

Separate F-Type Plasmids Have Shaped the Evolution of the H30 Subclone of Escherichia coli Sequence Type 131

by Timothy J. Johnson, Jessica L. Danzeisen, Bonnie Youmans, Kyle Case, Katharine Llop, Jeannette Munoz-Aguayo, Cristian Flores-Figueroa, Maliha Aziz, Nicole Stoesser, Evgeni Sokurenko, Lance B. Price, James R. Johnson, Mariana Castanheira
Published 2016-06-01

Rapid diagnostic tests for dengue virus infection in febrile Cambodian children: diagnostic accuracy and incorporation into diagnostic algorithms.

by Michael J Carter, Kate R Emary, Catrin E Moore, Christopher M Parry, Soeng Sona, Hor Putchhat, Sin Reaksmey, Ngoun Chanpheaktra, Nicole Stoesser, Andrew D M Dobson, Nicholas P J Day, Varun Kumar, Stuart D Blacksell
Published 2015-02-01

Correction: Rapid Diagnostic Tests for Dengue Virus Infection in Febrile Cambodian Children: Diagnostic Accuracy and Incorporation into Diagnostic Algorithms.

by Michael J Carter, Kate R Emary, Catherine E Moore, Christopher M Parry, Soeng Sona, Hor Putchhat, Sin Reaksmey, Ngoun Chanpheaktra, Nicole Stoesser, Andrew D M Dobson, Nicholas P J Day, Varun Kumar, Stuart D Blacksell
Published 2016-02-01

Clinical Clostridium difficile: clonality and pathogenicity locus diversity.

by Kate E Dingle, David Griffiths, Xavier Didelot, Jessica Evans, Alison Vaughan, Melina Kachrimanidou, Nicole Stoesser, Keith A Jolley, Tanya Golubchik, Rosalind M Harding, Tim E Peto, Warren Fawley, A Sarah Walker, Mark Wilcox, Derrick W Crook
Published 2011-01-01

Ten-year longitudinal molecular epidemiology study of Escherichia coli and Klebsiella species bloodstream infections in Oxfordshire, UK

by Samuel Lipworth, Karina-Doris Vihta, Kevin Chau, Leanne Barker, Sophie George, James Kavanagh, Timothy Davies, Alison Vaughan, Monique Andersson, Katie Jeffery, Sarah Oakley, Marcus Morgan, Susan Hopkins, Timothy E. A. Peto, Derrick W. Crook, Ann Sarah Walker, Nicole Stoesser
Published 2021-09-01

Antimicrobial Resistance in Invasive Bacterial Infections in Hospitalized Children, Cambodia, 2007–2016

by Andrew Fox-Lewis, Junko Takata, Thyl Miliya, Yoel Lubell, Sona Soeng, Poda Sar, Kolthida Rith, Gregor McKellar, Vanaporn Wuthiekanun, Erin McGonagle, Nicole Stoesser, Catrin E. Moore, Christopher M. Parry, Claudia Turner, Nicholas P.J. Day, Ben S. Cooper, Paul Turner
Published 2018-05-01

Population-level faecal metagenomic profiling as a tool to predict antimicrobial resistance in Enterobacterales isolates causing invasive infections: An exploratory study across Ca...

by Olga Tosas Auguet, Rene Niehus, Hyun Soon Gweon, James A. Berkley, Joseph Waichungo, Tsi Njim, Jonathan D. Edgeworth, Rahul Batra, Kevin Chau, Jeremy Swann, Sarah A. Walker, Tim E.A. Peto, Derrick W. Crook, Sarah Lamble, Paul Turner, Ben S. Cooper, Nicole Stoesser
Published 2021-06-01

A Role for Tetracycline Selection in Recent Evolution of Agriculture-Associated Clostridium difficile PCR Ribotype 078

by Kate E. Dingle, Xavier Didelot, T. Phuong Quan, David W. Eyre, Nicole Stoesser, Charis A. Marwick, John Coia, Derek Brown, Sarah Buchanan, Umer Z. Ijaz, Cosmika Goswami, Gill Douce, Warren N. Fawley, Mark H. Wilcox, Timothy E. A. Peto, A. Sarah Walker, Derrick W. Crook
Published 2019-03-01

Ct threshold values, a proxy for viral load in community SARS-CoV-2 cases, demonstrate wide variation across populations and over time

by A Sarah Walker, Emma Pritchard, Thomas House, Julie V Robotham, Paul J Birrell, Iain Bell, John I Bell, John N Newton, Jeremy Farrar, Ian Diamond, Ruth Studley, Jodie Hay, Karina-Doris Vihta, Timothy EA Peto, Nicole Stoesser, Philippa C Matthews, David W Eyre, Koen B Pouwels, COVID-19 Infection Survey team
Published 2021-07-01

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

by H. Soon Gweon, Liam P. Shaw, Jeremy Swann, Nicola De Maio, Manal AbuOun, Rene Niehus, Alasdair T. M. Hubbard, Mike J. Bowes, Mark J. Bailey, Tim E. A. Peto, Sarah J. Hoosdally, A. Sarah Walker, Robert P. Sebra, Derrick W. Crook, Muna F. Anjum, Daniel S. Read, Nicole Stoesser, on behalf of the REHAB consortium
Published 2019-10-01

Panton–Valentine leucocidin is the key determinant of Staphylococcus aureus pyomyositis in a bacterial GWAS

by Bernadette C Young, Sarah G Earle, Sona Soeng, Poda Sar, Varun Kumar, Songly Hor, Vuthy Sar, Rachel Bousfield, Nicholas D Sanderson, Leanne Barker, Nicole Stoesser, Katherine RW Emary, Christopher M Parry, Emma K Nickerson, Paul Turner, Rory Bowden, Derrick W Crook, David H Wyllie, Nicholas PJ Day, Daniel J Wilson, Catrin E Moore
Published 2019-02-01

A prospective study of the causes of febrile illness requiring hospitalization in children in Cambodia.

by Kheng Chheng, Michael J Carter, Kate Emary, Ngoun Chanpheaktra, Catrin E Moore, Nicole Stoesser, Hor Putchhat, Soeng Sona, Sin Reaksmey, Paul Kitsutani, Borann Sar, H Rogier van Doorn, Nguyen Hanh Uyen, Le Van Tan, Daniel H Paris, Stuart D Blacksell, Premjit Amornchai, Vanaporn Wuthiekanun, Christopher M Parry, Nicholas P J Day, Varun Kumar
Published 2013-01-01