Flexible and accurate detection of genomic copy-number changes from aCGH.

by Oscar M Rueda, Ramón Díaz-Uriarte
Published 2007-06-01

ADaCGH: A parallelized web-based application and R package for the analysis of aCGH data.

by Ramón Díaz-Uriarte, Oscar M Rueda
Published 2007-01-01

Asterias: A Parallelized Web-based Suite for the Analysis of Expression and aCGH Data

by Ramón Díaz-Uriarte, Patricio Yankilevich, David Casado, Oscar M. Rueda, Andrés Cañada, Edward R. Morrissey, Andreu Alibés
Published 2007-01-01

Asterias: A Parallelized Web-based Suite for the Analysis of Expression and aCGH Data

by Andreu Alibés, Edward R. Morrissey, Andrés Cañada, Oscar M. Rueda, David Casado, Patricio Yankilevich, Ramón Díaz-Uriarte
Published 2007-01-01

Intersect-then-combine approach: improving the performance of somatic variant calling in whole exome sequencing data using multiple aligners and callers

by Maurizio Callari, Stephen-John Sammut, Leticia De Mattos-Arruda, Alejandra Bruna, Oscar M. Rueda, Suet-Feung Chin, Carlos Caldas
Published 2017-04-01

A prognostic gene signature for metastasis-free survival of triple negative breast cancer patients.

by Unjin Lee, Casey Frankenberger, Jieun Yun, Elena Bevilacqua, Carlos Caldas, Suet-Feung Chin, Oscar M Rueda, John Reinitz, Marsha Rich Rosner
Published 2013-01-01

Transcriptional profiling reveals a subset of human breast tumors that retain wt TP53 but display mutant p53‐associated features

by Gal Benor, Garold Fuks, Suet‐Feung Chin, Oscar M. Rueda, Saptaparna Mukherjee, Sharathchandra Arandkar, Yael Aylon, Carlos Caldas, Eytan Domany, Moshe Oren
Published 2020-08-01

FGFR1 amplification or overexpression and hormonal resistance in luminal breast cancer: rationale for a triple blockade of ER, CDK4/6, and FGFR1

by Silvana Mouron, Luis Manso, Eduardo Caleiras, Jose L. Rodriguez-Peralto, Oscar M. Rueda, Carlos Caldas, Ramon Colomer, Miguel Quintela-Fandino, Maria J. Bueno
Published 2021-02-01

Context-Specific Effects of TGF-β/SMAD3 in Cancer Are Modulated by the Epigenome

by Ana Tufegdzic Vidakovic, Oscar M. Rueda, Stephin J. Vervoort, Ankita Sati Batra, Mae Akilina Goldgraben, Santiago Uribe-Lewis, Wendy Greenwood, Paul J. Coffer, Alejandra Bruna, Carlos Caldas
Published 2015-12-01

Computational approach to discriminate human and mouse sequences in patient-derived tumour xenografts

by Maurizio Callari, Ankita Sati Batra, Rajbir Nath Batra, Stephen-John Sammut, Wendy Greenwood, Harry Clifford, Colin Hercus, Suet-Feung Chin, Alejandra Bruna, Oscar M. Rueda, Carlos Caldas
Published 2018-01-01

NRG1 fusions in breast cancer

by Karen D. Howarth, Tashfina Mirza, Susanna L. Cooke, Suet-Feung Chin, Jessica C. Pole, Ernest Turro, Matthew D. Eldridge, Raquel Manzano Garcia, Oscar M. Rueda, Chris Boursnell, Jean E. Abraham, Carlos Caldas, Paul A. W. Edwards
Published 2021-01-01

The molecular landscape of Asian breast cancers reveals clinically relevant population-specific differences

by Jia-Wern Pan, Muhammad Mamduh Ahmad Zabidi, Pei-Sze Ng, Mei-Yee Meng, Siti Norhidayu Hasan, Bethan Sandey, Stephen-John Sammut, Cheng-Har Yip, Pathmanathan Rajadurai, Oscar M. Rueda, Carlos Caldas, Suet-Feung Chin, Soo-Hwang Teo
Published 2020-12-01

p120-catenin prevents multinucleation through control of MKLP1-dependent RhoA activity during cytokinesis

by Robert A.H. van de Ven, Jolien S. de Groot, Danielle Park, Robert van Domselaar, Danielle de Jong, Karoly Szuhai, Elsken van der Wall, Oscar M. Rueda, H. Raza Ali, Carlos Caldas, Paul J. van Diest, Martin W. Hetzer, Erik Sahai, Patrick W.B. Derksen
Published 2016-12-01

Correction: Corrigendum: p120-catenin prevents multinucleation through control of MKLP1-dependent RhoA activity during cytokinesis

by Robert A. H. van de Ven, Jolien S. de Groot, Danielle Park, Robert van Domselaar, Danielle de Jong, Karoly Szuhai, Elsken van der Wall, Oscar M. Rueda, H. Raza Ali, Carlos Caldas, Paul J. van Diest, Martin W. Hetzer, Erik Sahai, Patrick W. B. Derksen
Published 2017-09-01

Dynamics of multiple resistance mechanisms in plasma DNA during EGFR‐targeted therapies in non‐small cell lung cancer

by Dana Wai Yi Tsui, Muhammed Murtaza, Alvin Seng Cheong Wong, Oscar M Rueda, Christopher G Smith, Dineika Chandrananda, Ross A Soo, Hong Liang Lim, Boon Cher Goh, Carlos Caldas, Tim Forshew, Davina Gale, Wei Liu, James Morris, Francesco Marass, Tim Eisen, Tan Min Chin, Nitzan Rosenfeld
Published 2018-06-01

Endogenous Purification Reveals GREB1 as a Key Estrogen Receptor Regulatory Factor

by Hisham Mohammed, Clive D’Santos, Aurelien A. Serandour, H. Raza Ali, Gordon D. Brown, Alan Atkins, Oscar M. Rueda, Kelly A. Holmes, Vasiliki Theodorou, Jessica L.L. Robinson, Wilbert Zwart, Amel Saadi, Caryn S. Ross-Innes, Suet-Feung Chin, Suraj Menon, John Stingl, Carlo Palmieri, Carlos Caldas, Jason S. Carroll
Published 2013-02-01

Chlorambucil targets BRCA1/2‐deficient tumours and counteracts PARP inhibitor resistance

by Eliana MC Tacconi, Sophie Badie, Giuliana De Gregoriis, Timo Reisländer, Xianning Lai, Manuela Porru, Cecilia Folio, John Moore, Arnaud Kopp, Júlia Baguña Torres, Deborah Sneddon, Marcus Green, Simon Dedic, Jonathan W Lee, Ankita Sati Batra, Oscar M Rueda, Alejandra Bruna, Carlo Leonetti, Carlos Caldas, Bart Cornelissen, Laurent Brino, Anderson Ryan, Annamaria Biroccio, Madalena Tarsounas
Published 2019-07-01

DNA methylation landscapes of 1538 breast cancers reveal a replication-linked clock, epigenomic instability and cis-regulation

by Rajbir Nath Batra, Aviezer Lifshitz, Ana Tufegdzic Vidakovic, Suet-Feung Chin, Ankita Sati-Batra, Stephen-John Sammut, Elena Provenzano, H. Raza Ali, Ali Dariush, Alejandra Bruna, Leigh Murphy, Arnie Purushotham, Ian Ellis, Andrew Green, Francine E. Garrett-Bakelman, Chris Mason, Ari Melnick, Samuel A. J. R. Aparicio, Oscar M. Rueda, Amos Tanay, Carlos Caldas
Published 2021-09-01

Landscapes of cellular phenotypic diversity in breast cancer xenografts and their impact on drug response

by Dimitra Georgopoulou, Maurizio Callari, Oscar M. Rueda, Abigail Shea, Alistair Martin, Agnese Giovannetti, Fatime Qosaj, Ali Dariush, Suet-Feung Chin, Larissa S. Carnevalli, Elena Provenzano, Wendy Greenwood, Giulia Lerda, Elham Esmaeilishirazifard, Martin O’Reilly, Violeta Serra, Dario Bressan, IMAXT Consortium, Gordon B. Mills, H. Raza Ali, Sabina S. Cosulich, Gregory J. Hannon, Alejandra Bruna, Carlos Caldas
Published 2021-03-01

Improving breast cancer survival analysis through competition-based multidimensional modeling.

by Erhan Bilal, Janusz Dutkowski, Justin Guinney, In Sock Jang, Benjamin A Logsdon, Gaurav Pandey, Benjamin A Sauerwine, Yishai Shimoni, Hans Kristian Moen Vollan, Brigham H Mecham, Oscar M Rueda, Jorg Tost, Christina Curtis, Mariano J Alvarez, Vessela N Kristensen, Samuel Aparicio, Anne-Lise Børresen-Dale, Carlos Caldas, Andrea Califano, Stephen H Friend, Trey Ideker, Eric E Schadt, Gustavo A Stolovitzky, Adam A Margolin
Published 2013-01-01