Development of a SNP barcode to genotype Babesia microti infections.

by Mary Lynn Baniecki, Jade Moon, Kian Sani, Jacob E Lemieux, Stephen F Schaffner, Pardis C Sabeti
Published 2019-03-01

Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq

by Dylan Kotliar, Adrian Veres, M Aurel Nagy, Shervin Tabrizi, Eran Hodis, Douglas A Melton, Pardis C Sabeti
Published 2019-07-01

Ancient and recent adaptive evolution of primate non-homologous end joining genes.

by Ann Demogines, Alysia M East, Ji-Hoon Lee, Sharon R Grossman, Pardis C Sabeti, Tanya T Paull, Sara L Sawyer
Published 2010-10-01

Machine-learning Prognostic Models from the 2014–16 Ebola Outbreak: Data-harmonization Challenges, Validation Strategies, and mHealth Applications

by Andres Colubri, Mary-Anne Hartley, Matthew Siakor, Vanessa Wolfman, August Felix, Tom Sesay, Jeffrey G. Shaffer, Robert F. Garry, Donald S. Grant, Adam C. Levine, Pardis C. Sabeti
Published 2019-05-01

Identification of two independent risk factors for lupus within the MHC in United Kingdom families.

by Michelle M A Fernando, Christine R Stevens, Pardis C Sabeti, Emily C Walsh, Alasdair J M McWhinnie, Anila Shah, Todd Green, John D Rioux, Timothy J Vyse
Published 2007-11-01

The case for selection at CCR5-Delta32.

by Pardis C Sabeti, Emily Walsh, Steve F Schaffner, Patrick Varilly, Ben Fry, Holli B Hutcheson, Mike Cullen, Tarjei S Mikkelsen, Jessica Roy, Nick Patterson, Richard Cooper, David Reich, David Altshuler, Stephen O'Brien, Eric S Lander
Published 2005-11-01

Positive selection of a pre-expansion CAG repeat of the human SCA2 gene.

by Fuli Yu, Pardis C Sabeti, Paul Hardenbol, Qing Fu, Ben Fry, Xiuhua Lu, Sy Ghose, Richard Vega, Ag Perez, Shiran Pasternak, Suzanne M Leal, Thomas D Willis, David L Nelson, John Belmont, Richard A Gibbs
Published 2005-09-01

Reporter Assays for Ebola Virus Nucleoprotein Oligomerization, Virion-Like Particle Budding, and Minigenome Activity Reveal the Importance of Nucleoprotein Amino Acid Position 111

by Aaron E. Lin, William E. Diehl, Yingyun Cai, Courtney L. Finch, Chidiebere Akusobi, Robert N. Kirchdoerfer, Laura Bollinger, Stephen F. Schaffner, Elizabeth A. Brown, Erica Ollmann Saphire, Kristian G. Andersen, Jens H. Kuhn, Jeremy Luban, Pardis C. Sabeti
Published 2020-01-01

Genetic surveillance detects both clonal and epidemic transmission of malaria following enhanced intervention in Senegal.

by Rachel Daniels, Hsiao-Han Chang, Papa Diogoye Séne, Danny C Park, Daniel E Neafsey, Stephen F Schaffner, Elizabeth J Hamilton, Amanda K Lukens, Daria Van Tyne, Souleymane Mboup, Pardis C Sabeti, Daouda Ndiaye, Dyann F Wirth, Daniel L Hartl, Sarah K Volkman
Published 2013-01-01

Fatal Case of Chronic Jamestown Canyon Virus Encephalitis Diagnosed by Metagenomic Sequencing in Patient Receiving Rituximab

by Isaac H. Solomon, Vijay S. Ganesh, Guixia Yu, Xian Ding Deng, Michael R. Wilson, Steve Miller, Tracey A. Milligan, Shibani S. Mukerji, Abigail Mathewson, Justin Linxweiler, Darlene Morse, Jana M. Ritter, J. Erin Staples, Holly Hughes, Carolyn V. Gould, Pardis C. Sabeti, Charles Y. Chiu, Anne Piantadosi
Published 2021-01-01

Acute Lassa Virus Encephalitis with Lassa Virus in the Cerebrospinal Fluid but Absent in the Blood: A Case Report with a Positive Outcome

by Peter O. Okokhere, Cyril O. Erameh, Francis Alikah, Peter E. Akhideno, Christopher O. Iruolagbe, Omoregie O. Osazuwa, Idowu A. Bankole, Donatus I. Adomeh, Ikponmwosa Odia, Chris O. Aire, Jennifer Oyakhilome, Jacqueline Agbukor, Rebecca O. Atafo, Danny A. Asogun, Christian T. Happi, Pardis C. Sabeti, Stephan Günther, George O. Akpede
Published 2018-07-01

Prevalence of Lassa Virus Disease (LVD) in Nigerian children with fever or fever and convulsions in an endemic area.

by Odigie C Akhuemokhan, Rosemary O Ewah-Odiase, Nosa Akpede, Jacqueline Ehimuan, Donatus I Adomeh, Ikpomwonsa Odia, Sylvia C Olomu, Meike Pahlmann, Beate Becker-Ziaja, Christian T Happi, Danny A Asogun, Sylvanus A Okogbenin, Peter O Okokhere, Osagie S Dawodu, Irekpono U Omoike, Pardis C Sabeti, Stephan Günther, George O Akpede
Published 2017-07-01

Genomic investigation of a dengue virus outbreak in Thiès, Senegal, in 2018

by Amy Gaye, Tolla Ndiaye, Mouhamad Sy, Awa B. Deme, Alphonse B. Thiaw, Aita Sene, Cheikh Ndiaye, Younouss Diedhiou, Amadou M. Mbaye, Ibrahima Ndiaye, Christopher Tomkins-Tinch, Jules F. Gomis, Aida S. Badiane, Bronwyn MacInnis, Daniel J. Park, Mouhamadou Ndiaye, Ngayo Sy, Pardis C. Sabeti, Katherine J. Siddle, Daouda Ndiaye
Published 2021-05-01

Retrospective Cohort Study of Lassa Fever in Pregnancy, Southern Nigeria

by Sylvanus Okogbenin, Joseph Okoeguale, George Akpede, Andres Colubri, Kayla G. Barnes, Samar Mehta, Reuben Eifediyi, Felix Okogbo, Joseph Eigbefoh, Mojeed Momoh, Mojeed Rafiu, Donatus Adomeh, Ikponmwosa Odia, Chris Aire, Rebecca Atafo, Martha Okonofua, Meike Pahlman, Beate Becker-Ziaja, Danny Asogun, Peter Okokhere, Christian Happi, Stephan Günther, Pardis C. Sabeti, Ephraim Ogbaini-Emovon
Published 2019-08-01

Development of a single nucleotide polymorphism barcode to genotype Plasmodium vivax infections.

by Mary Lynn Baniecki, Aubrey L Faust, Stephen F Schaffner, Daniel J Park, Kevin Galinsky, Rachel F Daniels, Elizabeth Hamilton, Marcelo U Ferreira, Nadira D Karunaweera, David Serre, Peter A Zimmerman, Juliana M Sá, Thomas E Wellems, Lise Musset, Eric Legrand, Alexandre Melnikov, Daniel E Neafsey, Sarah K Volkman, Dyann F Wirth, Pardis C Sabeti
Published 2015-03-01

Monitoring of Ebola Virus Makona Evolution through Establishment of Advanced Genomic Capability in Liberia

by Jeffrey R. Kugelman, Michael R. Wiley, Suzanne Mate, Jason T. Ladner, Brett Beitzel, Lawrence Fakoli, Fahn Taweh, Karla Prieto, Joseph W. Diclaro, Timothy Minogue, Randal J. Schoepp, Kurt E. Schaecher, James Pettitt, Stacey Bateman, Joseph Fair, Jens H. Kuhn, Lisa Hensley, Daniel J. Park, Pardis C. Sabeti, Mariano Sanchez-Lockhart, Fatorma K. Bolay, Gustavo Palacios
Published 2015-07-01

Streamlined inactivation, amplification, and Cas13-based detection of SARS-CoV-2

by Jon Arizti-Sanz, Catherine A. Freije, Alexandra C. Stanton, Brittany A. Petros, Chloe K. Boehm, Sameed Siddiqui, Bennett M. Shaw, Gordon Adams, Tinna-Solveig F. Kosoko-Thoroddsen, Molly E. Kemball, Jessica N. Uwanibe, Fehintola V. Ajogbasile, Philomena E. Eromon, Robin Gross, Loni Wronka, Katie Caviness, Lisa E. Hensley, Nicholas H. Bergman, Bronwyn L. MacInnis, Christian T. Happi, Jacob E. Lemieux, Pardis C. Sabeti, Cameron Myhrvold
Published 2020-11-01

High crossreactivity of human T cell responses between Lassa virus lineages.

by Brian M Sullivan, Saori Sakabe, Jessica N Hartnett, Nhi Ngo, Augustine Goba, Mambu Momoh, John Demby Sandi, Lansana Kanneh, Beatrice Cubitt, Selma D Garcia, Brian C Ware, Dylan Kotliar, Refugio Robles-Sikisaka, Karthik Gangavarapu, Luis Branco, Philomena Eromon, Ikponmwosa Odia, Ephraim Ogbaini-Emovon, Onikepe Folarin, Sylvanus Okogbenin, Peter O Okokhere, Christian Happi, Juan Carlos de la Torre, Pardis C Sabeti, Kristian G Andersen, Robert F Garry, Donald S Grant, John S Schieffelin, Michael B A Oldstone
Published 2020-03-01

Discrete SARS-CoV-2 antibody titers track with functional humoral stability

by Yannic C. Bartsch, Stephanie Fischinger, Sameed M. Siddiqui, Zhilin Chen, Jingyou Yu, Makda Gebre, Caroline Atyeo, Matthew J. Gorman, Alex Lee Zhu, Jaewon Kang, John S. Burke, Matthew Slein, Matthew J. Gluck, Samuel Beger, Yiyuan Hu, Justin Rhee, Eric Petersen, Benjamin Mormann, Michael de St Aubin, Mohammad A. Hasdianda, Guruprasad Jambaulikar, Edward W. Boyer, Pardis C. Sabeti, Dan H. Barouch, Boris D. Julg, Elon R. Musk, Anil S. Menon, Douglas A. Lauffenburger, Eric J. Nilles, Galit Alter
Published 2021-02-01