Multiomic Strategies Reveal Diversity and Important Functional Aspects of Human Gut Microbiome

by Ravi Ranjan, Asha Rani, Patricia W. Finn, David L. Perkins
Published 2018-01-01

WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial Sequences.

by Ahmed A Metwally, Yang Dai, Patricia W Finn, David L Perkins
Published 2016-01-01

Effect of the Obesity Epidemic on Kidney Transplantation: Obesity Is Independent of Diabetes as a Risk Factor for Adverse Renal Transplant Outcomes.

by Jennifer M Kwan, Zahraa Hajjiri, Ahmed Metwally, Patricia W Finn, David L Perkins
Published 2016-01-01

Utilizing longitudinal microbiome taxonomic profiles to predict food allergy via Long Short-Term Memory networks.

by Ahmed A Metwally, Philip S Yu, Derek Reiman, Yang Dai, Patricia W Finn, David L Perkins
Published 2019-02-01

MetaLonDA: a flexible R package for identifying time intervals of differentially abundant features in metagenomic longitudinal studies

by Ahmed A. Metwally, Jie Yang, Christian Ascoli, Yang Dai, Patricia W. Finn, David L. Perkins
Published 2018-02-01

Abundance of Multidrug Resistance Efflux Pumps in the Urinary Metagenome of Kidney Transplant Patients

by Asha Rani, Ravi Ranjan, Ahmed A. Metwally, Daniel C. Brennan, Patricia W. Finn, David L. Perkins
Published 2020-01-01

Gene Co-expression Networks Identifies Common Hub Genes Between Cutaneous Sarcoidosis and Discoid Lupus Erythematosus

by Melissa A. Nickles, Kai Huang, Yi-Shin Chang, Maria M. Tsoukas, Nadera J. Sweiss, David L. Perkins, Patricia W. Finn
Published 2020-11-01

Atopic asthmatic immune phenotypes associated with airway microbiota and airway obstruction.

by Benjamin A Turturice, Halvor S McGee, Brian Oliver, Melissa Baraket, Brian T Nguyen, Christian Ascoli, Ravi Ranjan, Asha Rani, David L Perkins, Patricia W Finn
Published 2017-01-01

Air Pollution, Neonatal Immune Responses, and Potential Joint Effects of Maternal Depression

by Jill Hahn, Diane R. Gold, Brent A. Coull, Marie C. McCormick, Patricia W. Finn, David L. Perkins, Sheryl L. Rifas Shiman, Emily Oken, Laura D. Kubzansky
Published 2021-05-01

Perinatal granulopoiesis and risk of pediatric asthma

by Benjamin A Turturice, Juliana Theorell, Mary Dawn Koenig, Lisa Tussing-Humphreys, Diane R Gold, Augusto A Litonjua, Emily Oken, Sheryl L Rifas-Shiman, David L Perkins, Patricia W Finn
Published 2021-02-01

Unsupervised Clustering Reveals Sarcoidosis Phenotypes Marked by a Reduction in Lymphocytes Relate to Increased Inflammatory Activity on 18FDG-PET/CT

by Christen Vagts, Christian Ascoli, Dustin R. Fraidenburg, Robert P. Baughman, Yue Huang, Russell Edafetanure-Ibeh, Samreen Ahmed, Benjamin Levin, Benjamin Levin, Yang Lu, David L. Perkins, Patricia W. Finn, Nadera J. Sweiss, Nadera J. Sweiss
Published 2021-02-01

Disruption of innate defense responses by endoglycosidase HPSE promotes cell survival

by Alex Agelidis, Benjamin A. Turturice, Rahul K. Suryawanshi, Tejabhiram Yadavalli, Dinesh Jaishankar, Joshua Ames, James Hopkins, Lulia Koujah, Chandrashekhar D. Patil, Satvik R. Hadigal, Evan J. Kyzar, Anaamika Campeau, Jacob M. Wozniak, David J. Gonzalez, Israel Vlodavsky, Jin-ping Li, David L. Perkins, Patricia W. Finn, Deepak Shukla
Published 2021-04-01