Binary Metabolic Phenotypes and Phenotype Diversity Metrics for the Functional Characterization of Microbial Communities

by Stanislav N. Iablokov, Pavel S. Novichkov, Andrei L. Osterman, Dmitry A. Rodionov, Dmitry A. Rodionov
Published 2021-05-01

Metabolic Phenotypes as Potential Biomarkers for Linking Gut Microbiome With Inflammatory Bowel Diseases

by Stanislav N. Iablokov, Stanislav N. Iablokov, Natalia S. Klimenko, Natalia S. Klimenko, Daria A. Efimova, Tatiana Shashkova, Tatiana Shashkova, Pavel S. Novichkov, Pavel S. Novichkov, Dmitry A. Rodionov, Dmitry A. Rodionov, Alexander V. Tyakht, Alexander V. Tyakht
Published 2021-01-01

Comparative genomics of transcriptional regulation of methionine metabolism in Proteobacteria.

by Semen A Leyn, Inna A Suvorova, Tatiana D Kholina, Sofia S Sherstneva, Pavel S Novichkov, Mikhail S Gelfand, Dmitry A Rodionov
Published 2014-01-01

Dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria

by Vivek K. Mutalik, Pavel S. Novichkov, Morgan N. Price, Trenton K. Owens, Mark Callaghan, Sean Carim, Adam M. Deutschbauer, Adam P. Arkin
Published 2019-01-01

LurR is a regulator of the central lactate oxidation pathway in sulfate-reducing Desulfovibrio species.

by Lara Rajeev, Eric G Luning, Grant M Zane, Thomas R Juba, Alexey E Kazakov, Pavel S Novichkov, Judy D Wall, Aindrila Mukhopadhyay
Published 2019-01-01

High-throughput mapping of the phage resistance landscape in E. coli.

by Vivek K Mutalik, Benjamin A Adler, Harneet S Rishi, Denish Piya, Crystal Zhong, Britt Koskella, Elizabeth M Kutter, Richard Calendar, Pavel S Novichkov, Morgan N Price, Adam M Deutschbauer, Adam P Arkin
Published 2020-10-01

Comparative genomics and evolution of regulons of the LacI-family transcription factors

by Dmitry A Ravcheev, Matvei S Khoroshkin, Olga N Laikova, Olga V Tsoy, Natalia V Sernova, Svetlana A Petrova, Aleksandra B Rakhmaninova, Pavel S Novichkov, Mikhail S Gelfand, Mikhail S Gelfand, Dmitry A Rodionov, Dmitry A Rodionov
Published 2014-06-01

Micronutrient Requirements and Sharing Capabilities of the Human Gut Microbiome

by Dmitry A. Rodionov, Dmitry A. Rodionov, Aleksandr A. Arzamasov, Aleksandr A. Arzamasov, Matvei S. Khoroshkin, Stanislav N. Iablokov, Stanislav N. Iablokov, Semen A. Leyn, Semen A. Leyn, Scott N. Peterson, Pavel S. Novichkov, Andrei L. Osterman
Published 2019-06-01

Characterization of a Metal-Resistant Bacillus Strain With a High Molybdate Affinity ModA From Contaminated Sediments at the Oak Ridge Reservation

by Xiaoxuan Ge, Michael P. Thorgersen, Farris L. Poole, Adam M. Deutschbauer, John-Marc Chandonia, Pavel S. Novichkov, Sara Gushgari-Doyle, Lauren M. Lui, Torben Nielsen, Romy Chakraborty, Paul D. Adams, Paul D. Adams, Adam P. Arkin, Adam P. Arkin, Terry C. Hazen, Michael W. W. Adams
Published 2020-10-01