Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics

by Peter D. Karp, Peter E. Midford, Ron Caspi, Arkady Khodursky
Published 2021-03-01

Using Pathway Covering to Explore Connections among Metabolites

by Peter E. Midford, Mario Latendresse, Paul E. O’Maille, Peter D. Karp
Published 2019-05-01

Phenex: ontological annotation of phenotypic diversity.

by James P Balhoff, Wasila M Dahdul, Cartik R Kothari, Hilmar Lapp, John G Lundberg, Paula Mabee, Peter E Midford, Monte Westerfield, Todd J Vision
Published 2010-05-01

Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature.

by Wasila M Dahdul, James P Balhoff, Jeffrey Engeman, Terry Grande, Eric J Hilton, Cartik Kothari, Hilmar Lapp, John G Lundberg, Peter E Midford, Todd J Vision, Monte Westerfield, Paula M Mabee
Published 2010-05-01

The EcoCyc Database in 2021

by Ingrid M. Keseler, Socorro Gama-Castro, Amanda Mackie, Richard Billington, César Bonavides-Martínez, Ron Caspi, Anamika Kothari, Markus Krummenacker, Peter E. Midford, Luis Muñiz-Rascado, Wai Kit Ong, Suzanne Paley, Alberto Santos-Zavaleta, Alberto Santos-Zavaleta, Pallavi Subhraveti, Víctor H. Tierrafría, Alan J. Wolfe, Julio Collado-Vides, Julio Collado-Vides, Ian T. Paulsen, Peter D. Karp
Published 2021-07-01

Emerging semantics to link phenotype and environment

by Anne E. Thessen, Daniel E. Bunker, Pier Luigi Buttigieg, Laurel D. Cooper, Wasila M. Dahdul, Sami Domisch, Nico M. Franz, Pankaj Jaiswal, Carolyn J. Lawrence-Dill, Peter E. Midford, Christopher J. Mungall, Martín J. Ramírez, Chelsea D. Specht, Lars Vogt, Rutger Aldo Vos, Ramona L. Walls, Jeffrey W. White, Guanyang Zhang, Andrew R. Deans, Eva Huala, Suzanna E. Lewis, Paula M. Mabee
Published 2015-12-01

Finding our way through phenotypes.

by Andrew R Deans, Suzanna E Lewis, Eva Huala, Salvatore S Anzaldo, Michael Ashburner, James P Balhoff, David C Blackburn, Judith A Blake, J Gordon Burleigh, Bruno Chanet, Laurel D Cooper, Mélanie Courtot, Sándor Csösz, Hong Cui, Wasila Dahdul, Sandip Das, T Alexander Dececchi, Agnes Dettai, Rui Diogo, Robert E Druzinsky, Michel Dumontier, Nico M Franz, Frank Friedrich, George V Gkoutos, Melissa Haendel, Luke J Harmon, Terry F Hayamizu, Yongqun He, Heather M Hines, Nizar Ibrahim, Laura M Jackson, Pankaj Jaiswal, Christina James-Zorn, Sebastian Köhler, Guillaume Lecointre, Hilmar Lapp, Carolyn J Lawrence, Nicolas Le Novère, John G Lundberg, James Macklin, Austin R Mast, Peter E Midford, István Mikó, Christopher J Mungall, Anika Oellrich, David Osumi-Sutherland, Helen Parkinson, Martín J Ramírez, Stefan Richter, Peter N Robinson, Alan Ruttenberg, Katja S Schulz, Erik Segerdell, Katja C Seltmann, Michael J Sharkey, Aaron D Smith, Barry Smith, Chelsea D Specht, R Burke Squires, Robert W Thacker, Anne Thessen, Jose Fernandez-Triana, Mauno Vihinen, Peter D Vize, Lars Vogt, Christine E Wall, Ramona L Walls, Monte Westerfeld, Robert A Wharton, Christian S Wirkner, James B Woolley, Matthew J Yoder, Aaron M Zorn, Paula Mabee
Published 2015-01-01