RIM-DB: a taxonomic framework for community structure analysis of methanogenic archaea from the rumen and other intestinal environments

by Henning Seedorf, Sandra Kittelmann, Gemma Henderson, Peter H. Janssen
Published 2014-08-01

A proposed taxonomy of anaerobic fungi (class neocallimastigomycetes) suitable for large-scale sequence-based community structure analysis.

by Sandra Kittelmann, Graham E Naylor, John P Koolaard, Peter H Janssen
Published 2012-01-01

Dynamics and genetic diversification of Escherichia coli during experimental adaptation to an anaerobic environment

by Thomas J. Finn, Sonal Shewaramani, Sinead C. Leahy, Peter H. Janssen, Christina D. Moon
Published 2017-05-01

Seasonal changes in the digesta-adherent rumen bacterial communities of dairy cattle grazing pasture.

by Samantha J Noel, Graeme T Attwood, Jasna Rakonjac, Christina D Moon, Garry C Waghorn, Peter H Janssen
Published 2017-01-01

Lambs fed fresh winter forage rape (Brassica napus L.) emit less methane than those fed perennial ryegrass (Lolium perenne L.), and possible mechanisms behind the difference.

by Xuezhao Sun, Gemma Henderson, Faith Cox, German Molano, Scott J Harrison, Dongwen Luo, Peter H Janssen, David Pacheco
Published 2015-01-01

Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities.

by Sandra Kittelmann, Henning Seedorf, William A Walters, Jose C Clemente, Rob Knight, Jeffrey I Gordon, Peter H Janssen
Published 2013-01-01

Internal transcribed spacer 1 secondary structure analysis reveals a common core throughout the anaerobic fungi (Neocallimastigomycota).

by Christian Koetschan, Sandra Kittelmann, Jingli Lu, Djamila Al-Halbouni, Graeme N Jarvis, Tobias Müller, Matthias Wolf, Peter H Janssen
Published 2014-01-01

Two different bacterial community types are linked with the low-methane emission trait in sheep.

by Sandra Kittelmann, Cesar S Pinares-Patiño, Henning Seedorf, Michelle R Kirk, Siva Ganesh, John C McEwan, Peter H Janssen
Published 2014-01-01

Vaccination of Sheep with a Methanogen Protein Provides Insight into Levels of Antibody in Saliva Needed to Target Ruminal Methanogens.

by Supatsak Subharat, Dairu Shu, Tao Zheng, Bryce M Buddle, Kan Kaneko, Sarah Hook, Peter H Janssen, D Neil Wedlock
Published 2016-01-01

Effect of DNA extraction methods and sampling techniques on the apparent structure of cow and sheep rumen microbial communities.

by Gemma Henderson, Faith Cox, Sandra Kittelmann, Vahideh Heidarian Miri, Michael Zethof, Samantha J Noel, Garry C Waghorn, Peter H Janssen
Published 2013-01-01

Improved taxonomic assignment of rumen bacterial 16S rRNA sequences using a revised SILVA taxonomic framework

by Gemma Henderson, Pelin Yilmaz, Sandeep Kumar, Robert J. Forster, William J. Kelly, Sinead C. Leahy, Le Luo Guan, Peter H. Janssen
Published 2019-03-01

Effects of long-acting, broad spectra anthelmintic treatments on the rumen microbial community compositions of grazing sheep

by Christina D. Moon, Luis Carvalho, Michelle R. Kirk, Alan F. McCulloch, Sandra Kittelmann, Wayne Young, Peter H. Janssen, Dave M. Leathwick
Published 2021-02-01

A protocol combining breath testing and ex vivo fermentations to study the human gut microbiome

by Laura Payling, Nicole C. Roy, Karl Fraser, Simon M. Loveday, Ian M. Sims, Peter H. Janssen, Stefan J. Hill, Laura G. Raymond, Warren C. McNabb
Published 2021-03-01

The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions.

by Sinead C Leahy, William J Kelly, Eric Altermann, Ron S Ronimus, Carl J Yeoman, Diana M Pacheco, Dong Li, Zhanhao Kong, Sharla McTavish, Carrie Sang, Suzanne C Lambie, Peter H Janssen, Debjit Dey, Graeme T Attwood
Published 2010-01-01

A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling.

by Melanie K Hess, Suzanne J Rowe, Tracey C Van Stijn, Hannah M Henry, Sharon M Hickey, Rudiger Brauning, Alan F McCulloch, Andrew S Hess, Michelle R Kirk, Sandeep Kumar, Cesar Pinares-Patiño, Sandra Kittelmann, Graham R Wood, Peter H Janssen, John C McEwan
Published 2020-01-01