Microbial Communities of <i>Cladonia</i> Lichens and Their Biosynthetic Gene Clusters Potentially Encoding Natural Products

by Tânia Keiko Shishido, Matti Wahlsten, Pia Laine, Jouko Rikkinen, Taina Lundell, Petri Auvinen
Published 2021-06-01

Mitochondrial genome of Phlebia radiata is the second largest (156 kbp) among fungi and features signs of genome flexibility and recent recombination events.

by Heikki Salavirta, Ilona Oksanen, Jaana Kuuskeri, Miia Mäkelä, Pia Laine, Lars Paulin, Taina Lundell
Published 2014-01-01

Genome Sequence of Dickeya solani, a New soft Rot Pathogen of Potato, Suggests its Emergence May Be Related to a Novel Combination of Non-Ribosomal Peptide/Polyketide Synthetase...

by Linda Garlant, Patrik Koskinen, Leo Rouhiainen, Pia Laine, Lars Paulin, Petri Auvinen, Liisa Holm, Minna Pirhonen
Published 2013-12-01

gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output.

by Juhana I Kammonen, Olli-Pekka Smolander, Lars Paulin, Pedro A B Pereira, Pia Laine, Patrik Koskinen, Jukka Jernvall, Petri Auvinen
Published 2019-01-01

Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi

by Mari Mäkinen, Jaana Kuuskeri, Pia Laine, Olli-Pekka Smolander, Andriy Kovalchuk, Zhen Zeng, Fred O. Asiegbu, Lars Paulin, Petri Auvinen, Taina Lundell
Published 2019-05-01

Red-Brown Pigmentation of <i>Acidipropionibacterium jensenii</i> Is Tied to Haemolytic Activity and <i>cyl-</i>Like Gene Cluster

by Paulina Deptula, Iida Loivamaa, Olli-Pekka Smolander, Pia Laine, Richard J. Roberts, Vieno Piironen, Lars Paulin, Kirsi Savijoki, Petri Auvinen, Pekka Varmanen
Published 2019-10-01

Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1

by Outi Niemi, Pia Laine, Patrik Koskinen, Miia Pasanen, Ville Pennanen, Heidi Harjunpää, Johanna Nykyri, Liisa Holm, Lars Paulin, Petri Auvinen, E. Tapio Palva, Minna Pirhonen
Published 2017-12-01

Faecal microbiota composition in adults is associated with the FUT2 gene determining the secretor status.

by Pirjo Wacklin, Jarno Tuimala, Janne Nikkilä, Sebastian Tims, Harri Mäkivuokko, Noora Alakulppi, Pia Laine, Mirjana Rajilic-Stojanovic, Lars Paulin, Willem M de Vos, Jaana Mättö
Published 2014-01-01

Genomic characterization of the most barotolerant Listeria monocytogenes RO15 strain compared to reference strains used to evaluate food high pressure processing

by Ilhan Cem Duru, Margarita Andreevskaya, Pia Laine, Tone Mari Rode, Anne Ylinen, Trond Løvdal, Nadav Bar, Peter Crauwels, Christian U. Riedel, Florentina Ionela Bucur, Anca Ioana Nicolau, Petri Auvinen
Published 2020-07-01

High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes

by Ilhan Cem Duru, Florentina Ionela Bucur, Margarita Andreevskaya, Bahareh Nikparvar, Anne Ylinen, Leontina Grigore-Gurgu, Tone Mari Rode, Peter Crauwels, Pia Laine, Lars Paulin, Trond Løvdal, Christian U. Riedel, Nadav Bar, Daniela Borda, Anca Ioana Nicolau, Petri Auvinen
Published 2021-02-01

The complete genome sequence of Listeria monocytogenes strain S2542 and expression of selected genes under high-pressure processing

by Ilhan Cem Duru, Florentina Ionela Bucur, Margarita Andreevskaya, Anne Ylinen, Peter Crauwels, Leontina Grigore-Gurgu, Bahareh Nikparvar, Tone Mari Rode, Pia Laine, Lars Paulin, Trond Løvdal, Christian U. Riedel, Nadav Bar, Daniela Borda, Anca Ioana Nicolau, Petri Auvinen
Published 2021-04-01

Comparative genomic and functional analysis of 100 Lactobacillus rhamnosus strains and their comparison with strain GG.

by François P Douillard, Angela Ribbera, Ravi Kant, Taija E Pietilä, Hanna M Järvinen, Marcel Messing, Cinzia L Randazzo, Lars Paulin, Pia Laine, Jarmo Ritari, Cinzia Caggia, Tanja Lähteinen, Stan J J Brouns, Reetta Satokari, Ingemar von Ossowski, Justus Reunanen, Airi Palva, Willem M de Vos
Published 2013-01-01

Cloning of the wheat Yr15 resistance gene sheds light on the plant tandem kinase-pseudokinase family

by Valentina Klymiuk, Elitsur Yaniv, Lin Huang, Dina Raats, Andrii Fatiukha, Shisheng Chen, Lihua Feng, Zeev Frenkel, Tamar Krugman, Gabriel Lidzbarsky, Wei Chang, Marko J. Jääskeläinen, Christian Schudoma, Lars Paulin, Pia Laine, Harbans Bariana, Hanan Sela, Kamran Saleem, Chris Khadgi Sørensen, Mogens S. Hovmøller, Assaf Distelfeld, Boulos Chalhoub, Jorge Dubcovsky, Abraham B. Korol, Alan H. Schulman, Tzion Fahima
Published 2018-10-01