Next Generation Sequencing for HIV-1 Drug Resistance Testing—A Special Issue Walkthrough

by Rami Kantor
Published 2021-02-01

Dry Panels Supporting External Quality Assessment Programs for Next Generation Sequencing-Based HIV Drug Resistance Testing

by Marc Noguera-Julian, Emma R. Lee, Robert W. Shafer, Rami Kantor, Hezhao Ji
Published 2020-06-01

External Quality Assessment Program for Next-Generation Sequencing-Based HIV Drug Resistance Testing: Logistical Considerations

by Hezhao Ji, Neil Parkin, Feng Gao, Thomas Denny, Cheryl Jennings, Paul Sandstrom, Rami Kantor
Published 2020-05-01

Next-Generation Sequencing for HIV Drug Resistance Testing: Laboratory, Clinical, and Implementation Considerations

by Santiago Ávila-Ríos, Neil Parkin, Ronald Swanstrom, Roger Paredes, Robert Shafer, Hezhao Ji, Rami Kantor
Published 2020-06-01

Analysis of unusual and signature APOBEC-mutations in HIV-1 pol next-generation sequences.

by Philip L Tzou, Sergei L Kosakovsky Pond, Santiago Avila-Rios, Susan P Holmes, Rami Kantor, Robert W Shafer
Published 2020-01-01

Are We Ready for NGS HIV Drug Resistance Testing? The Second “Winnipeg Consensus” Symposium

by Hezhao Ji, Paul Sandstrom, Roger Paredes, P. Richard Harrigan, Chanson J. Brumme, Santiago Avila Rios, Marc Noguera-Julian, Neil Parkin, Rami Kantor
Published 2020-05-01

HIV-1 RNA levels and antiretroviral drug resistance in blood and non-blood compartments from HIV-1-infected men and women enrolled in AIDS clinical trials group study A5077.

by Rami Kantor, Daniel Bettendorf, Ronald J Bosch, Marita Mann, David Katzenstein, Susan Cu-Uvin, Richard D'Aquila, Lisa Frenkel, Susan Fiscus, Robert Coombs, ACTG A5077 Study Team
Published 2014-01-01

Risk group characteristics and viral transmission clusters in South-East Asian patients infected with human immunodeficiency virus-1 (HIV-1) circulating recombinant form (CRF) 01_A...

by Rebecca A. Oyomopito, Yen-Ju Chen, Somnuek Sungkanuparph, Rami Kantor, Tuti Merati, Wing-Cheong Yam, Thira Sirisanthana, Patrick C.K. Li, Pacharee Kantipong, Praphan Phanuphak, Chris K.C. Lee, Adeeba Kamarulzaman, Rossana Ditangco, Szu-Wei Huang, Annette H. Sohn, Matthew Law, Yi Ming A. Chen
Published 2015-09-01

Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update.

by Diane E Bennett, Ricardo J Camacho, Dan Otelea, Daniel R Kuritzkes, Hervé Fleury, Mark Kiuchi, Walid Heneine, Rami Kantor, Michael R Jordan, Jonathan M Schapiro, Anne-Mieke Vandamme, Paul Sandstrom, Charles A B Boucher, David van de Vijver, Soo-Yon Rhee, Tommy F Liu, Deenan Pillay, Robert W Shafer
Published 2009-01-01

Collaborative update of a rule-based expert system for HIV-1 genotypic resistance test interpretation.

by Roger Paredes, Philip L Tzou, Gert van Zyl, Geoff Barrow, Ricardo Camacho, Sergio Carmona, Philip M Grant, Ravindra K Gupta, Raph L Hamers, P Richard Harrigan, Michael R Jordan, Rami Kantor, David A Katzenstein, Daniel R Kuritzkes, Frank Maldarelli, Dan Otelea, Carole L Wallis, Jonathan M Schapiro, Robert W Shafer
Published 2017-01-01

Multi-Laboratory Comparison of Next-Generation to Sanger-Based Sequencing for HIV-1 Drug Resistance Genotyping

by Neil T. Parkin, Santiago Avila-Rios, David F. Bibby, Chanson J. Brumme, Susan H. Eshleman, P. Richard Harrigan, Mark Howison, Gillian Hunt, Hezhao Ji, Rami Kantor, Johanna Ledwaba, Emma R. Lee, Margarita Matías-Florentino, Jean L. Mbisa, Marc Noguera-Julian, Roger Paredes, Vanessa Rivera-Amill, Ronald Swanstrom, Daniel J. Zaccaro, Yinfeng Zhang, Shuntai Zhou, Cheryl Jennings
Published 2020-06-01

Impact of HIV-1 subtype and antiretroviral therapy on protease and reverse transcriptase genotype: results of a global collaboration.

by Rami Kantor, David A Katzenstein, Brad Efron, Ana Patricia Carvalho, Brian Wynhoven, Patricia Cane, John Clarke, Sunee Sirivichayakul, Marcelo A Soares, Joke Snoeck, Candice Pillay, Hagit Rudich, Rosangela Rodrigues, Africa Holguin, Koya Ariyoshi, Maria Belen Bouzas, Pedro Cahn, Wataru Sugiura, Vincent Soriano, Luis F Brigido, Zehava Grossman, Lynn Morris, Anne-Mieke Vandamme, Amilcar Tanuri, Praphan Phanuphak, Jonathan N Weber, Deenan Pillay, P Richard Harrigan, Ricardo Camacho, Jonathan M Schapiro, Robert W Shafer
Published 2005-04-01

HIV-1 Drug Resistance Mutations: Potential Applications for Point-of-Care Genotypic Resistance Testing.

by Soo-Yon Rhee, Michael R Jordan, Elliot Raizes, Arlene Chua, Neil Parkin, Rami Kantor, Gert U Van Zyl, Irene Mukui, Mina C Hosseinipour, Lisa M Frenkel, Nicaise Ndembi, Raph L Hamers, Tobias F Rinke de Wit, Carole L Wallis, Ravindra K Gupta, Joseph Fokam, Clement Zeh, Jonathan M Schapiro, Sergio Carmona, David Katzenstein, Michele Tang, Avelin F Aghokeng, Tulio De Oliveira, Annemarie M J Wensing, Joel E Gallant, Mark A Wainberg, Douglas D Richman, Joseph E Fitzgibbon, Marco Schito, Silvia Bertagnolio, Chunfu Yang, Robert W Shafer
Published 2015-01-01

Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration

by Soo-Yon Rhee, Vici Varghese, Susan P. Holmes, Gert U. Van Zyl, Kim Steegen, Mark A. Boyd, David A. Cooper, Sabin Nsanzimana, Shanmugam Saravanan, Charlotte Charpentier, Tulio de Oliveira, Mary-Ann A. Etiebet, Federico Garcia, Dominique Goedhals, Perpetua Gomes, Huldrych F. Günthard, Raph L. Hamers, Christopher J Hoffmann, Gillian Hunt, Awachana Jiamsakul, Pontiano Kaleebu, Phyllis Kanki, Rami Kantor, Bernhard Kerschberger, Vincent C. Marconi, Jean D'amour Ndahimana, Nicaise Ndembi, Nicole Ngo-Giang-Huong, Casper Rokx, Maria M. Santoro, Jonathan M. Schapiro, Daniel Schmidt, Lillian Seu, Kim C.E. Sigaloff, Sunee Sirivichayakul, Lindiwe Skhosana, Henry Sunpath, Michele Tang, Chunfu Yang, Sergio Carmona, Ravindra K. Gupta, Robert W. Shafer
Published 2017-04-01