Next-generation sequencing-based user-friendly platforms for drug-resistant tuberculosis diagnosis: A promise for the near future

by David L Dolinger, Rebecca E Colman, David M Engelthaler, Timothy C Rodwell
Published 2016-01-01

Age and sex distribution of Mycobacterium tuberculosis infection and rifampicin resistance in Myanmar as detected by Xpert MTB/RIF

by Marva Seifert, Hlaing Thazin Aung, Nicole Besler, Victoria Harris, Tin Tin Mar, Rebecca E. Colman, Timothy C. Rodwell, Si Thu Aung
Published 2021-08-01

Low cost, low tech SNP genotyping tools for resource-limited areas: Plague in Madagascar as a model.

by Cedar L Mitchell, Voahangy Andrianaivoarimanana, Rebecca E Colman, Joseph Busch, Heidie Hornstra-O'Neill, Paul S Keim, David M Wagner, Minoarisoa Rajerison, Dawn N Birdsell
Published 2017-12-01

Fine-scale Identification of the Most Likely Source of a Human Plague Infection

by Rebecca E. Colman, Amy J. Vogler, Jennifer L. Lowell, Kenneth L. Gage, Christina Morway, Pamela J. Reynolds, Paul Ettestad, Paul Keim, Michael Y. Kosoy, David M. Wagner
Published 2009-10-01

Genomic characterization of Burkholderia pseudomallei isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence.

by Jason W Sahl, Christopher J Allender, Rebecca E Colman, Katy J Califf, James M Schupp, Bart J Currie, Kristopher E Van Zandt, H Carl Gelhaus, Paul Keim, Apichai Tuanyok
Published 2015-01-01

Whole-genome and targeted sequencing of drug-resistant Mycobacterium tuberculosis on the iSeq100 and MiSeq: A performance, ease-of-use, and cost evaluation.

by Rebecca E Colman, Aurélien Mace, Marva Seifert, Jonathan Hetzel, Haifa Mshaiel, Anita Suresh, Darrin Lemmer, David M Engelthaler, Donald G Catanzaro, Amanda G Young, Claudia M Denkinger, Timothy C Rodwell
Published 2019-04-01

Diverse Burkholderia Species Isolated from Soils in the Southern United States with No Evidence of B. pseudomallei.

by Carina M Hall, Joseph D Busch, Kenzie Shippy, Christopher J Allender, Mirjam Kaestli, Mark Mayo, Jason W Sahl, James M Schupp, Rebecca E Colman, Paul Keim, Bart J Currie, David M Wagner
Published 2015-01-01

Best Practices for Evaluating Single Nucleotide Variant Calling Methods for Microbial Genomics

by Nathan eOlson, Steven P. Lund, Rebecca E. Colman, Jeffrey T Foster, Jason W Sahl, James M Schupp, Paul eKeim, Paul eKeim, Jayne B Morrow, Marc L Salit, Marc L Salit, Justin M Zook
Published 2015-07-01

Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing.

by Rebecca E Colman, James M Schupp, Nathan D Hicks, David E Smith, Jordan L Buchhagen, Faramarz Valafar, Valeriu Crudu, Elena Romancenco, Ecaterina Noroc, Lynn Jackson, Donald G Catanzaro, Timothy C Rodwell, Antonino Catanzaro, Paul Keim, David M Engelthaler
Published 2015-01-01

Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis.

by Erin P Price, Heidie M Hornstra, Direk Limmathurotsakul, Tamara L Max, Derek S Sarovich, Amy J Vogler, Julia L Dale, Jennifer L Ginther, Benjamin Leadem, Rebecca E Colman, Jeffrey T Foster, Apichai Tuanyok, David M Wagner, Sharon J Peacock, Talima Pearson, Paul Keim
Published 2010-01-01

The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers

by Jason W. Sahl, Adam J. Vazquez, Carina M. Hall, Joseph D. Busch, Apichai Tuanyok, Mark Mayo, James M. Schupp, Madeline Lummis, Talima Pearson, Kenzie Shippy, Rebecca E. Colman, Christopher J. Allender, Vanessa Theobald, Derek S. Sarovich, Erin P. Price, Alex Hutcheson, Jonas Korlach, John J. LiPuma, Jason Ladner, Sean Lovett, Galina Koroleva, Gustavo Palacios, Direk Limmathurotsakul, Vanaporn Wuthiekanun, Gumphol Wongsuwan, Bart J. Currie, Paul Keim, David M. Wagner
Published 2016-09-01