Toward a Better Understanding of Species Interactions through Network Biology

by Ryan S. McClure
Published 2019-05-01

TLR-dependent human mucosal epithelial cell responses to microbial pathogens.

by Paola eMassari, Ryan eMcClure
Published 2014-08-01

Gene co-expression network analysis in zebrafish reveals chemical class specific modules

by Prarthana Shankar, Ryan S. McClure, Katrina M. Waters, Robyn L. Tanguay
Published 2021-09-01

Oxygen dynamics control the burial of organic carbon in a eutrophic reservoir

by Cayelan C. Carey, Jonathan P. Doubek, Ryan P. McClure, Paul C. Hanson
Published 2018-06-01

Whole-Ecosystem Experiments Reveal Varying Responses of Phytoplankton Functional Groups to Epilimnetic Mixing in a Eutrophic Reservoir

by Mary E. Lofton, Ryan P. McClure, Shengyang Chen, John C. Little, Cayelan C. Carey
Published 2019-01-01

Improving network inference algorithms using resampling methods

by Sean M Colby, Ryan S McClure, Christopher C Overall, Ryan S Renslow, Jason E McDermott
Published 2018-10-01

Hypolimnetic Hypoxia Increases the Biomass Variability and Compositional Variability of Crustacean Zooplankton Communities

by Jonathan P. Doubek, Kylie L. Campbell, Mary E. Lofton, Ryan P. McClure, Cayelan C. Carey
Published 2019-10-01

Integrated in silico Analyses of Regulatory and Metabolic Networks of Synechococcus sp. PCC 7002 Reveal Relationships between Gene Centrality and Essentiality

by Hyun-Seob Song, Ryan S. McClure, Hans C. Bernstein, Christopher C. Overall, Eric A. Hill, Alexander S. Beliaev
Published 2015-03-01

Coupling Genome-wide Transcriptomics and Developmental Toxicity Profiles in Zebrafish to Characterize Polycyclic Aromatic Hydrocarbon (PAH) Hazard

by Prarthana Shankar, Mitra C. Geier, Lisa Truong, Ryan S. McClure, Paritosh Pande, Katrina M. Waters, Robert L. Tanguay
Published 2019-05-01

Unified feature association networks through integration of transcriptomic and proteomic data.

by Ryan S McClure, Jason P Wendler, Joshua N Adkins, Jesica Swanstrom, Ralph Baric, Brooke L Deatherage Kaiser, Kristie L Oxford, Katrina M Waters, Jason E McDermott
Published 2019-09-01

Metabologenomics: Correlation of Microbial Gene Clusters with Metabolites Drives Discovery of a Nonribosomal Peptide with an Unusual Amino Acid Monomer

by Anthony W. Goering, Ryan A. McClure, James R. Doroghazi, Jessica C. Albright, Nicole A. Haverland, Yongbo Zhang, Kou-San Ju, Regan J. Thomson, William W. Metcalf, Neil L. Kelleher
Published 2016-01-01

Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture

by Nymul Khan, Yukari Maezato, Ryan S. McClure, Colin J. Brislawn, Jennifer M. Mobberley, Nancy Isern, William B. Chrisler, Lye Meng Markillie, Brett M. Barney, Hyun-Seob Song, William C. Nelson, Hans C. Bernstein
Published 2018-01-01

Enhancing collaboration between ecologists and computer scientists: lessons learned and recommendations forward

by Cayelan C. Carey, Nicole K. Ward, Kaitlin J. Farrell, Mary E. Lofton, Arianna I. Krinos, Ryan P. McClure, Kensworth C. Subratie, Renato J. Figueiredo, Jonathan P. Doubek, Paul C. Hanson, Philip Papadopoulos, Peter Arzberger
Published 2019-05-01

Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth

by Hans C. Bernstein, Ryan S. McClure, Eric A. Hill, Lye Meng Markillie, William B. Chrisler, Margie F. Romine, Jason E. McDermott, Matthew C. Posewitz, Donald A. Bryant, Allan E. Konopka, James K. Fredrickson, Alexander S. Beliaev
Published 2016-07-01

Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership

by Hans C. Bernstein, Ryan S. McClure, Vera Thiel, Natalie C. Sadler, Young-Mo Kim, William B. Chrisler, Eric A. Hill, Donald A. Bryant, Margaret F. Romine, Janet K. Jansson, Jim K. Fredrickson, Alexander S. Beliaev, Mark J. Mandel
Published 2017-03-01