Ranking the quality of protein structure models using sidechain based network properties [v1; ref status: indexed, http://f1000r.es/2eu]

by Soma Ghosh, Saraswathi Vishveshwara
Published 2014-01-01

Insights into the fold organization of TIM barrel from interaction energy based structure networks.

by M S Vijayabaskar, Saraswathi Vishveshwara
Published 2012-01-01

Interaction signatures stabilizing the NAD(P)-binding Rossmann fold: a structure network approach.

by Moitrayee Bhattacharyya, Roopali Upadhyay, Saraswathi Vishveshwara
Published 2012-01-01

Mechanism of Iron-Dependent Repressor (IdeR) Activation and DNA Binding: A Molecular Dynamics and Protein Structure Network Study.

by Soma Ghosh, Nagasuma Chandra, Saraswathi Vishveshwara
Published 2015-12-01

Insights into protein-DNA interactions through structure network analysis.

by R Sathyapriya, M S Vijayabaskar, Saraswathi Vishveshwara
Published 2008-01-01

A search for energy minimized sequences of proteins.

by Anupam Nath Jha, G K Ananthasuresh, Saraswathi Vishveshwara
Published 2009-08-01

Metabolome based reaction graphs of M. tuberculosis and M. leprae: a comparative network analysis.

by Ketki D Verkhedkar, Karthik Raman, Nagasuma R Chandra, Saraswathi Vishveshwara
Published 2007-09-01

Surveying the Side-Chain Network Approach to Protein Structure and Dynamics: The SARS-CoV-2 Spike Protein as an Illustrative Case

by Anushka Halder, Arinnia Anto, Varsha Subramanyan, Moitrayee Bhattacharyya, Smitha Vishveshwara, Saraswathi Vishveshwara
Published 2020-12-01

Targeting the pregnane X receptor using microbial metabolite mimicry

by Zdeněk Dvořák, Felix Kopp, Cait M Costello, Jazmin S Kemp, Hao Li, Aneta Vrzalová, Martina Štěpánková, Iveta Bartoňková, Eva Jiskrová, Karolína Poulíková, Barbora Vyhlídalová, Lars U Nordstroem, Chamini V Karunaratne, Harmit S Ranhotra, Kyu Shik Mun, Anjaparavanda P Naren, Iain A Murray, Gary H Perdew, Julius Brtko, Lucia Toporova, Arne Schön, Bret D Wallace, William G Walton, Matthew R Redinbo, Katherine Sun, Amanda Beck, Sandhya Kortagere, Michelle C Neary, Aneesh Chandran, Saraswathi Vishveshwara, Maria M Cavalluzzi, Giovanni Lentini, Julia Yue Cui, Haiwei Gu, John C March, Shirshendu Chatterjee, Adam Matson, Dennis Wright, Kyle L Flannigan, Simon A Hirota, Ryan Balfour Sartor, Sridhar Mani
Published 2020-04-01

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

by Chen Keasar, Liam J. McGuffin, Björn Wallner, Gaurav Chopra, Badri Adhikari, Debswapna Bhattacharya, Lauren Blake, Leandro Oliveira Bortot, Renzhi Cao, B. K. Dhanasekaran, Itzhel Dimas, Rodrigo Antonio Faccioli, Eshel Faraggi, Robert Ganzynkowicz, Sambit Ghosh, Soma Ghosh, Artur Giełdoń, Lukasz Golon, Yi He, Lim Heo, Jie Hou, Main Khan, Firas Khatib, George A. Khoury, Chris Kieslich, David E. Kim, Pawel Krupa, Gyu Rie Lee, Hongbo Li, Jilong Li, Agnieszka Lipska, Adam Liwo, Ali Hassan A. Maghrabi, Milot Mirdita, Shokoufeh Mirzaei, Magdalena A. Mozolewska, Melis Onel, Sergey Ovchinnikov, Anand Shah, Utkarsh Shah, Tomer Sidi, Adam K. Sieradzan, Magdalena Ślusarz, Rafal Ślusarz, James Smadbeck, Phanourios Tamamis, Nicholas Trieber, Tomasz Wirecki, Yanping Yin, Yang Zhang, Jaume Bacardit, Maciej Baranowski, Nicholas Chapman, Seth Cooper, Alexandre Defelicibus, Jeff Flatten, Brian Koepnick, Zoran Popović, Bartlomiej Zaborowski, David Baker, Jianlin Cheng, Cezary Czaplewski, Alexandre Cláudio Botazzo Delbem, Christodoulos Floudas, Andrzej Kloczkowski, Stanislaw Ołdziej, Michael Levitt, Harold Scheraga, Chaok Seok, Johannes Söding, Saraswathi Vishveshwara, Dong Xu, Foldit Players consortium, Silvia N. Crivelli
Published 2018-07-01

Computer Modeling and Molecular Dynamics Simulation Of Angiogenins And Its Ligand Bound Complexes

by Madhusudhan, M S
Published 2006