PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

by Sean P. Gordon, Joshua J. Levy, John P. Vogel
Published 2019-07-01

Generation and characterization of the Western Regional Research Center Brachypodium T-DNA insertional mutant collection.

by Jennifer N Bragg, Jiajie Wu, Sean P Gordon, Mara E Guttman, Roger Thilmony, Gerard R Lazo, Yong Q Gu, John P Vogel
Published 2012-01-01

Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei.

by Vinh Ha Dinh Thi, Olivier Coriton, Isabelle Le Clainche, Dominique Arnaud, Sean P Gordon, Gabriella Linc, Pilar Catalan, Robert Hasterok, John P Vogel, Joseph Jahier, Boulos Chalhoub
Published 2016-01-01

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing.

by Sean P Gordon, Elizabeth Tseng, Asaf Salamov, Jiwei Zhang, Xiandong Meng, Zhiying Zhao, Dongwan Kang, Jason Underwood, Igor V Grigoriev, Melania Figueroa, Jonathan S Schilling, Feng Chen, Zhong Wang
Published 2015-01-01

Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat

by Eva C. Henningsen, Vahid Omidvar, Rafael Della Coletta, Jean-Michel Michno, Erin Gilbert, Feng Li, Marisa E. Miller, Chad L. Myers, Chad L. Myers, Sean P. Gordon, John P. Vogel, John P. Vogel, Brian J. Steffenson, Shahryar F. Kianian, Shahryar F. Kianian, Cory D. Hirsch, Melania Figueroa
Published 2021-04-01

A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem

by Franziska Rabe, Jason Bosch, Alexandra Stirnberg, Tilo Guse, Lisa Bauer, Denise Seitner, Fernando A Rabanal, Angelika Czedik-Eysenberg, Simon Uhse, Janos Bindics, Bianca Genenncher, Fernando Navarrete, Ronny Kellner, Heinz Ekker, Jochen Kumlehn, John P Vogel, Sean P Gordon, Thierry C Marcel, Martin Münsterkötter, Mathias C Walter, Christian MK Sieber, Gertrud Mannhaupt, Ulrich Güldener, Regine Kahmann, Armin Djamei
Published 2016-11-01

The genomic landscape of molecular responses to natural drought stress in Panicum hallii

by John T. Lovell, Jerry Jenkins, David B. Lowry, Sujan Mamidi, Avinash Sreedasyam, Xiaoyu Weng, Kerrie Barry, Jason Bonnette, Brandon Campitelli, Chris Daum, Sean P. Gordon, Billie A. Gould, Albina Khasanova, Anna Lipzen, Alice MacQueen, Juan Diego Palacio-Mejía, Christopher Plott, Eugene V. Shakirov, Shengqiang Shu, Yuko Yoshinaga, Matt Zane, Dave Kudrna, Jason D. Talag, Daniel Rokhsar, Jane Grimwood, Jeremy Schmutz, Thomas E. Juenger
Published 2018-12-01

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure

by Sean P. Gordon, Bruno Contreras-Moreira, Daniel P. Woods, David L. Des Marais, Diane Burgess, Shengqiang Shu, Christoph Stritt, Anne C. Roulin, Wendy Schackwitz, Ludmila Tyler, Joel Martin, Anna Lipzen, Niklas Dochy, Jeremy Phillips, Kerrie Barry, Koen Geuten, Hikmet Budak, Thomas E. Juenger, Richard Amasino, Ana L. Caicedo, David Goodstein, Patrick Davidson, Luis A. J. Mur, Melania Figueroa, Michael Freeling, Pilar Catalan, John P. Vogel
Published 2017-12-01

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

by Sean P. Gordon, Bruno Contreras-Moreira, Joshua J. Levy, Armin Djamei, Angelika Czedik-Eysenberg, Virginia S. Tartaglio, Adam Session, Joel Martin, Amy Cartwright, Andrew Katz, Vasanth R. Singan, Eugene Goltsman, Kerrie Barry, Vinh Ha Dinh-Thi, Boulos Chalhoub, Antonio Diaz-Perez, Ruben Sancho, Joanna Lusinska, Elzbieta Wolny, Candida Nibau, John H. Doonan, Luis A. J. Mur, Chris Plott, Jerry Jenkins, Samuel P. Hazen, Scott J. Lee, Shengqiang Shu, David Goodstein, Daniel Rokhsar, Jeremy Schmutz, Robert Hasterok, Pilar Catalan, John P. Vogel
Published 2020-07-01