A generalized spatial measure for resilience of microbial systems

by Ryan S. Renslow, Stephen R. Lindemann, Hyun-Seob eSong
Published 2016-04-01

Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated ‘Omics Approach

by Stephen R. Lindemann, Stephen R. Lindemann, Stephen R. Lindemann, Jennifer M. Mobberley, Jessica K. Cole, L. M. Markillie, Ronald C. Taylor, Eric Huang, William B. Chrisler, H. S. Wiley, Mary S. Lipton, William C. Nelson, James K. Fredrickson, Margaret F. Romine
Published 2017-06-01

Maize Bran Particle Size Governs the Community Composition and Metabolic Output of Human Gut Microbiota in in vitro Fermentations

by Riya D. Thakkar, Yunus E. Tuncil, Bruce R. Hamaker, Stephen R. Lindemann
Published 2020-05-01

Prediction of multi-drug resistance transporters using a novel sequence analysis method [v2; ref status: indexed, http://f1000r.es/5ef]

by Jason E. McDermott, Paul Bruillard, Christopher C. Overall, Luke Gosink, Stephen R. Lindemann
Published 2015-05-01

Minimal Interspecies Interaction Adjustment (MIIA): Inference of Neighbor-Dependent Interactions in Microbial Communities

by Hyun-Seob Song, Joon-Yong Lee, Shin Haruta, William C. Nelson, Dong-Yup Lee, Dong-Yup Lee, Stephen R. Lindemann, Stephen R. Lindemann, Jim K. Fredrickson, Hans C. Bernstein, Hans C. Bernstein
Published 2019-06-01

Subtle Variations in Dietary-Fiber Fine Structure Differentially Influence the Composition and Metabolic Function of Gut Microbiota

by Yunus E. Tuncil, Riya D. Thakkar, Seda Arioglu-Tuncil, Bruce R. Hamaker, Stephen R. Lindemann
Published 2020-05-01

Fine Carbohydrate Structure of Dietary Resistant Glucans Governs the Structure and Function of Human Gut Microbiota

by Arianna D. Romero Marcia, Tianming Yao, Ming-Hsu Chen, Renee E. Oles, Stephen R. Lindemann
Published 2021-08-01

Combining Genome-Scale Experimental and Computational Methods To Identify Essential Genes in Rhodobacter sphaeroides

by Brian T. Burger, Saheed Imam, Matthew J. Scarborough, Daniel R. Noguera, Timothy J. Donohue, Stephen R. Lindemann
Published 2017-06-01

Syntrophic anaerobic photosynthesis via direct interspecies electron transfer

by Phuc T. Ha, Stephen R. Lindemann, Liang Shi, Alice C. Dohnalkova, James K. Fredrickson, Michael T. Madigan, Haluk Beyenal
Published 2017-01-01

Effects of Three Distinct 2-Week Long Diet Strategies After Transport on Weaned Pigs' Short and Long-Term Welfare Markers, Behaviors, and Microbiota

by Severine P. Parois, Severine P. Parois, Alan W. Duttlinger, Brian T. Richert, Stephen R. Lindemann, Jay S. Johnson, Jeremy N. Marchant-Forde
Published 2020-03-01

Prediction of Neighbor-Dependent Microbial Interactions From Limited Population Data

by Joon-Yong Lee, Shin Haruta, Souichiro Kato, Hans C. Bernstein, Hans C. Bernstein, Stephen R. Lindemann, Dong-Yup Lee, Dong-Yup Lee, Jim K. Fredrickson, Hyun-Seob Song, Hyun-Seob Song, Hyun-Seob Song
Published 2020-01-01

Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions

by Jessica K Cole, Janine R Hutchison, Ryan Scott Renslow, Young-Mo eKim, William B Chrisler, Heather E Engelmann, Alice C Dohnalkova, Dehong eHu, Thomas O Metz, Jim K Fredrickson, Stephen R Lindemann
Published 2014-04-01

The Epsomitic Phototrophic Microbial Mat of Hot Lake, Washington: Community Structural Responses to Seasonal Cycling

by Stephen R Lindemann, James J Moran, James C Stegen, Ryan S Renslow, Janine R Hutchison, Jessica K Cole, Alice C Dohnalkova, Julien eTremblay, Kanwar eSingh, Stephanie A Malfatti, Feng eChen, Susannah Green Tringe, Haluk eBeyenal, James K Fredrickson
Published 2013-11-01

Nitrogen Source Governs Community Carbon Metabolism in a Model Hypersaline Benthic Phototrophic Biofilm

by Christopher R. Anderton, Jennifer M. Mobberley, Jessica K. Cole, Jamie R. Nunez, Robert Starke, Amy A. Boaro, Yasemin Yesiltepe, Beau R. Morton, Alexandra B. Cory, Hayley C. Cardamone, Kirsten S. Hofmockel, Mary S. Lipton, James J. Moran, Ryan S. Renslow, James K. Fredrickson, Stephen R. Lindemann
Published 2020-06-01

MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments

by Chengdong Xu, Sneha P. Couvillion, Ryan L. Sontag, Nancy G. Isern, Yukari Maezato, Stephen R. Lindemann, Taniya Roy Chowdhury, Rui Zhao, Beau R. Morton, Rosalie K. Chu, Ronald J. Moore, Janet K. Jansson, Vanessa L. Bailey, Paula J. Mouser, Margaret F. Romine, James F. Fredrickson, Thomas O. Metz
Published 2021-06-01