Mapping whole genome shotgun sequence and variant calling in mammalian species without their reference genomes [v2; ref status: indexed, http://f1000r.es/2x3]

by Ted Kalbfleisch, Michael P Heaton
Published 2014-02-01

Characterization of an APC Promoter 1B deletion in a Patient Diagnosed with Familial Adenomatous Polyposis via Whole Genome Shotgun Sequencing [v1; ref status: indexed, http://f100...

by Ted Kalbfleisch, Pamela Brock, Angela Snow, Deborah Neklason, Gordon Gowans, Jon Klein
Published 2015-06-01

Comparison of the Equine Reference Sequence with Its Sanger Source Data and New Illumina Reads.

by Jovan Rebolledo-Mendez, Matthew S Hestand, Stephen J Coleman, Zheng Zeng, Ludovic Orlando, James N MacLeod, Ted Kalbfleisch
Published 2015-01-01

Using triallelic SNPs for determining parentage in North American yak (Bos grunniens) and estimating cattle (B. taurus) introgression [version 2; peer review: 2 approved]

by Ted Kalbfleisch, Jessica L. Petersen, R. G. Tait Jr., Jiansheng Qiu, Veronica Basnayake, Peter H. Hackett, Michael P. Heaton
Published 2020-10-01

Coding RNA Sequencing of Equine Endometrium during Maternal Recognition of Pregnancy

by Kristin M. Klohonatz, Stephen J. Coleman, Alma D. Islas-Trejo, Juan F. Medrano, Ann M. Hess, Ted Kalbfleisch, Milton G. Thomas, Gerrit J. Bouma, Jason E. Bruemmer
Published 2019-09-01

Allelic Variation in CXCL16 Determines CD3+ T Lymphocyte Susceptibility to Equine Arteritis Virus Infection and Establishment of Long-Term Carrier State in the Stallion.

by Sanjay Sarkar, Ernest Bailey, Yun Young Go, R Frank Cook, Ted Kalbfleisch, John Eberth, R Lakshman Chelvarajan, Kathleen M Shuck, Sergey Artiushin, Peter J Timoney, Udeni B R Balasuriya
Published 2016-12-01

Non-Coding RNA Sequencing of Equine Endometrium During Maternal Recognition of Pregnancy

by Kristin M. Klohonatz, Stephen J. Coleman, Ashley D. Cameron, Ann M. Hess, Kailee J. Reed, Angela Canovas, Juan F. Medrano, Alma D. Islas-Trejo, Ted Kalbfleisch, Gerrit J. Bouma, Jason E. Bruemmer
Published 2019-10-01

Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds

by Robert J. Schaefer, Mikkel Schubert, Ernest Bailey, Danika L. Bannasch, Eric Barrey, Gila Kahila Bar-Gal, Gottfried Brem, Samantha A. Brooks, Ottmar Distl, Ruedi Fries, Carrie J. Finno, Vinzenz Gerber, Bianca Haase, Vidhya Jagannathan, Ted Kalbfleisch, Tosso Leeb, Gabriella Lindgren, Maria Susana Lopes, Núria Mach, Artur da Câmara Machado, James N. MacLeod, Annette McCoy, Julia Metzger, Cecilia Penedo, Sagi Polani, Stefan Rieder, Imke Tammen, Jens Tetens, Georg Thaller, Andrea Verini-Supplizi, Claire M. Wade, Barbara Wallner, Ludovic Orlando, James R. Mickelson, Molly E. McCue
Published 2017-07-01