Comparative evaluation of network features for the prediction of breast cancer metastasis

by Nahim Adnan, Zhijie Liu, Tim H.M. Huang, Jianhua Ruan
Published 2020-04-01

Integration of DNA methylation and gene transcription across nineteen cell types reveals cell type-specific and genomic region-dependent regulatory patterns

by Binhua Tang, Yufan Zhou, Chiou-Miin Wang, Tim H.-M. Huang, Victor X. Jin
Published 2017-06-01

The influence of cis-regulatory elements on DNA methylation fidelity.

by Mingxiang Teng, Curt Balch, Yunlong Liu, Meng Li, Tim H M Huang, Yadong Wang, Kenneth P Nephew, Lang Li
Published 2012-01-01

Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

by Yufan Zhou, Xiaolong Cheng, Yini Yang, Tian Li, Jingwei Li, Tim H.-M. Huang, Junbai Wang, Shili Lin, Victor X. Jin
Published 2020-08-01

RNA polymerase II binding patterns reveal genomic regions involved in microRNA gene regulation.

by Guohua Wang, Yadong Wang, Changyu Shen, Yi-wen Huang, Kun Huang, Tim H M Huang, Kenneth P Nephew, Lang Li, Yunlong Liu
Published 2010-11-01

CMS: a web-based system for visualization and analysis of genome-wide methylation data of human cancers.

by Fei Gu, Mark S Doderer, Yi-Wen Huang, Juan C Roa, Paul J Goodfellow, E Lynette Kizer, Tim H M Huang, Yidong Chen
Published 2013-01-01

ChIP-seq defined genome-wide map of TGFβ/SMAD4 targets: implications with clinical outcome of ovarian cancer.

by Brian A Kennedy, Daniel E Deatherage, Fei Gu, Binhua Tang, Michael W Y Chan, Kenneth P Nephew, Tim H-M Huang, Victor X Jin
Published 2011-01-01

High resolution detection and analysis of CpG dinucleotides methylation using MBD-Seq technology.

by Xun Lan, Christopher Adams, Mark Landers, Miroslav Dudas, Daniel Krissinger, George Marnellos, Russell Bonneville, Maoxiong Xu, Junbai Wang, Tim H-M Huang, Gavin Meredith, Victor X Jin
Published 2011-01-01

Age-associated genes in human mammary gland drive human breast cancer progression

by Xiang Gu, Bingzhi Wang, Haiyan Zhu, You Zhou, Aaron M. Horning, Tim H-M Huang, Yidong Chen, Peter Houghton, Zhao Lai, Joel E. Michalek, Lu-Zhe Sun
Published 2020-06-01

An Application of a Service-oriented System to Support ArrayAnnotation in Custom Chip Design for Epigenomic Analysis

by Joel H. Saltz, Tim H.-M. Huang, Greg Singer, Tahsin Kurc, Dustin Potter, Junghee Han, Ramana V. Davuluri, Scott Oster, Stephen Langella, Shannon Hastings, Sun Hao, Pearlly S. Yan
Published 2008-01-01

LOcating non-unique matched tags (LONUT) to improve the detection of the enriched regions for ChIP-seq data.

by Rui Wang, Hang-Kai Hsu, Adam Blattler, Yisong Wang, Xun Lan, Yao Wang, Pei-Yin Hsu, Yu-Wei Leu, Tim H-M Huang, Peggy J Farnham, Victor X Jin
Published 2013-01-01

DNA Methylation Targets Influenced by Bisphenol A and/or Genistein Are Associated with Survival Outcomes in Breast Cancer Patients

by Rohit R. Jadhav, Julia Santucci-Pereira, Yao V. Wang, Joseph Liu, Theresa D. Nguyen, Jun Wang, Sarah Jenkins, Jose Russo, Tim H.-M. Huang, Victor X. Jin, Coral A. Lamartiniere
Published 2017-05-01

Cooperativity of stress-responsive transcription factors in core hypoxia-inducible factor binding regions.

by Diego Villar, Amaya Ortiz-Barahona, Laura Gómez-Maldonado, Nuria Pescador, Fátima Sánchez-Cabo, Hubert Hackl, Benjamin A T Rodriguez, Zlatko Trajanoski, Ana Dopazo, Tim H M Huang, Pearlly S Yan, Luis Del Peso
Published 2012-01-01

LINE-1 hypomethylation in cancer is highly variable and inversely correlated with microsatellite instability.

by Marcos R H Estécio, Vazganush Gharibyan, Lanlan Shen, Ashraf E K Ibrahim, Ketan Doshi, Rong He, Jaroslav Jelinek, Allen S Yang, Pearlly S Yan, Tim H-M Huang, Eloiza H Tajara, Jean-Pierre J Issa
Published 2007-05-01

Aberrant Transforming Growth Factor β1 Signaling and SMAD4 Nuclear Translocation Confer Epigenetic Repression of ADAM19 in Ovarian Cancer

by Michael W.Y. Chan, Yi-Wen Huang, Corinna Hartman-Frey, Chieh-Ti Kuo, Daniel Deatherage, Huaxia Qin, Alfred S.L. Cheng, Pearlly S. Yan, Ramana V. Davuluri, Tim H.-M. Huang, Kenneth P. Nephew, Huey-Jen L. Lin
Published 2008-09-01

ERα-related chromothripsis enhances concordant gene transcription on chromosome 17q11.1-q24.1 in luminal breast cancer

by Chun-Lin Lin, Xi Tan, Meizhen Chen, Meena Kusi, Chia-Nung Hung, Chih-Wei Chou, Ya-Ting Hsu, Chiou-Miin Wang, Nameer Kirma, Chun-Liang Chen, Ching-Hung Lin, Kate I. Lathrop, Richard Elledge, Virginia G. Kaklamani, Kohzoh Mitsuya, Tim H.-M. Huang
Published 2020-05-01