OncoPeptVAC: A robust TCR binding algorithm to prioritize neoepitope using tumor mutation (DNAseq) and gene expression (RNAseq) data

by Snigdha Majumder, Vasumathi Kode, Priyanka Shah, Anand Kumar, Ravi Gupta, Amit Chaudhuri, Papia Chakraborty
Published 2017-12-01

Immunodominant T-cell epitopes from the SARS-CoV-2 spike antigen reveal robust pre-existing T-cell immunity in unexposed individuals

by Swapnil Mahajan, Vasumathi Kode, Keshav Bhojak, Coral Karunakaran, Kayla Lee, Malini Manoharan, Athulya Ramesh, Sudheendra HV, Ankita Srivastava, Rekha Sathian, Tahira Khan, Prasanna Kumar, Ravi Gupta, Papia Chakraborty, Amitabha Chaudhuri
Published 2021-06-01

Integrated genomic analysis reveals mutated ELF3 as a potential gallbladder cancer vaccine candidate

by Akhilesh Pandey, Eric W. Stawiski, Steffen Durinck, Harsha Gowda, Leonard D. Goldstein, Mustafa A. Barbhuiya, Markus S. Schröder, Sreelakshmi K. Sreenivasamurthy, Sun-Whe Kim, Sameer Phalke, Kushal Suryamohan, Kayla Lee, Papia Chakraborty, Vasumathi Kode, Xiaoshan Shi, Aditi Chatterjee, Keshava Datta, Aafaque A. Khan, Tejaswini Subbannayya, Jing Wang, Subhra Chaudhuri, Sanjiv Gupta, Braj Raj Shrivastav, Bijay S. Jaiswal, Satish S. Poojary, Shushruta Bhunia, Patricia Garcia, Carolina Bizama, Lorena Rosa, Wooil Kwon, Hongbeom Kim, Youngmin Han, Thakur Deen Yadav, Vedam L. Ramprasad, Amitabha Chaudhuri, Zora Modrusan, Juan Carlos Roa, Pramod Kumar Tiwari, Jin-Young Jang, Somasekar Seshagiri
Published 2020-08-01