Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer.

by Ali Bashir, Stanislav Volik, Colin Collins, Vineet Bafna, Benjamin J Raphael
Published 2008-04-01

Skmer: assembly-free and alignment-free sample identification using genome skims

by Shahab Sarmashghi, Kristine Bohmann, M. Thomas P. Gilbert, Vineet Bafna, Siavash Mirarab
Published 2019-02-01

Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele.

by Roy Ronen, Glenn Tesler, Ali Akbari, Shay Zakov, Noah A Rosenberg, Vineet Bafna
Published 2015-09-01

Correction: Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele.

by Roy Ronen, Glenn Tesler, Ali Akbari, Shay Zakov, Noah A Rosenberg, Vineet Bafna
Published 2016-11-01

Sample reproducibility of genetic association using different multimarker TDTs in genome-wide association studies: characterization and a new approach.

by Mara M Abad-Grau, Nuria Medina-Medina, Rosana Montes-Soldado, Fuencisla Matesanz, Vineet Bafna
Published 2012-01-01

EcSeg: Semantic Segmentation of Metaphase Images Containing Extrachromosomal DNA

by Utkrisht Rajkumar, Kristen Turner, Jens Luebeck, Viraj Deshpande, Manmohan Chandraker, Paul Mischel, Vineet Bafna
Published 2019-11-01

Multiple mechanisms drive genomic adaptation to extreme O2 levels in Drosophila melanogaster

by Arya Iranmehr, Tsering Stobdan, Dan Zhou, Huiwen Zhao, Sergey Kryazhimskiy, Vineet Bafna, Gabriel G. Haddad
Published 2021-02-01

A covering method for detecting genetic associations between rare variants and common phenotypes.

by Gaurav Bhatia, Vikas Bansal, Olivier Harismendy, Nicholas J Schork, Eric J Topol, Kelly Frazer, Vineet Bafna
Published 2010-10-01

Exploring the landscape of focal amplifications in cancer using AmpliconArchitect

by Viraj Deshpande, Jens Luebeck, Nam-Phuong D. Nguyen, Mehrdad Bakhtiari, Kristen M. Turner, Richard Schwab, Hannah Carter, Paul S. Mischel, Vineet Bafna
Published 2019-01-01

Variable number tandem repeats mediate the expression of proximal genes

by Mehrdad Bakhtiari, Jonghun Park, Yuan-Chun Ding, Sharona Shleizer-Burko, Susan L. Neuhausen, Bjarni V. Halldórsson, Kári Stefánsson, Melissa Gymrek, Vineet Bafna
Published 2021-04-01

The TGFβ1 Promoter SNP C-509T and Food Sensitization Promote Esophageal Remodeling in Pediatric Eosinophilic Esophagitis.

by Renee Rawson, Arjun Anilkumar, Robert O Newbury, Vineet Bafna, Melissa Aquino, Jacob Palmquist, Hal M Hoffman, James L Mueller, Ranjan Dohil, David H Broide, Seema S Aceves
Published 2015-01-01

AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications

by Jens Luebeck, Ceyda Coruh, Siavash R. Dehkordi, Joshua T. Lange, Kristen M. Turner, Viraj Deshpande, Dave A. Pai, Chao Zhang, Utkrisht Rajkumar, Julie A. Law, Paul S. Mischel, Vineet Bafna
Published 2020-09-01

Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells

by Tomoyuki Koga, Isaac A. Chaim, Jorge A. Benitez, Sebastian Markmiller, Alison D. Parisian, Robert F. Hevner, Kristen M. Turner, Florian M. Hessenauer, Matteo D’Antonio, Nam-phuong D. Nguyen, Shahram Saberi, Jianhui Ma, Shunichiro Miki, Antonia D. Boyer, John Ravits, Kelly A. Frazer, Vineet Bafna, Clark C. Chen, Paul S. Mischel, Gene W. Yeo, Frank B. Furnari
Published 2020-01-01

Author Correction: Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells

by Tomoyuki Koga, Isaac A. Chaim, Jorge A. Benitez, Sebastian Markmiller, Alison D. Parisian, Robert F. Hevner, Kristen M. Turner, Florian M. Hessenauer, Matteo D’Antonio, Nam-phuong D. Nguyen, Shahram Saberi, Jianhui Ma, Shunichiro Miki, Antonia D. Boyer, John Ravits, Kelly A. Frazer, Vineet Bafna, Clark C. Chen, Paul S. Mischel, Gene W. Yeo, Frank B. Furnari
Published 2020-04-01

The diploid genome sequence of an individual human.

by Samuel Levy, Granger Sutton, Pauline C Ng, Lars Feuk, Aaron L Halpern, Brian P Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R MacDonald, Andy Wing Chun Pang, Mary Shago, Timothy B Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul A Kravitz, Dana A Busam, Karen Y Beeson, Tina C McIntosh, Karin A Remington, Josep F Abril, John Gill, Jon Borman, Yu-Hui Rogers, Marvin E Frazier, Stephen W Scherer, Robert L Strausberg, J Craig Venter
Published 2007-09-01

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.

by Shibu Yooseph, Granger Sutton, Douglas B Rusch, Aaron L Halpern, Shannon J Williamson, Karin Remington, Jonathan A Eisen, Karla B Heidelberg, Gerard Manning, Weizhong Li, Lukasz Jaroszewski, Piotr Cieplak, Christopher S Miller, Huiying Li, Susan T Mashiyama, Marcin P Joachimiak, Christopher van Belle, John-Marc Chandonia, David A Soergel, Yufeng Zhai, Kannan Natarajan, Shaun Lee, Benjamin J Raphael, Vineet Bafna, Robert Friedman, Steven E Brenner, Adam Godzik, David Eisenberg, Jack E Dixon, Susan S Taylor, Robert L Strausberg, Marvin Frazier, J Craig Venter
Published 2007-03-01