Detecting sample swaps in diverse NGS data types using linkage disequilibrium

by Nauman Javed, Yossi Farjoun, Tim J. Fennell, Charles B. Epstein, Bradley E. Bernstein, Noam Shoresh
Published 2020-07-01

A validated lineage-derived somatic truth data set enables benchmarking in cancer genome analysis

by Megan Shand, Jose Soto, Lee Lichtenstein, David Benjamin, Yossi Farjoun, Yehuda Brody, Yosef Maruvka, Paul C. Blainey, Eric Banks
Published 2020-12-01

Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms

by Maura Costello, Mark Fleharty, Justin Abreu, Yossi Farjoun, Steven Ferriera, Laurie Holmes, Brian Granger, Lisa Green, Tom Howd, Tamara Mason, Gina Vicente, Michael Dasilva, Wendy Brodeur, Timothy DeSmet, Sheila Dodge, Niall J. Lennon, Stacey Gabriel
Published 2018-05-01

Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects

by Allison A. Regier, Yossi Farjoun, David E. Larson, Olga Krasheninina, Hyun Min Kang, Daniel P. Howrigan, Bo-Juen Chen, Manisha Kher, Eric Banks, Darren C. Ames, Adam C. English, Heng Li, Jinchuan Xing, Yeting Zhang, Tara Matise, Goncalo R. Abecasis, Will Salerno, Michael C. Zody, Benjamin M. Neale, Ira M. Hall
Published 2018-10-01

Return on investment and library complexity analysis for DNA sequencing

by Hogstrom, Larson J
Published 2016